miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 5' -56.4 NC_004812.1 + 103965 0.66 0.903501
Target:  5'- cCGggGGGAcCGGAacgGGGGGcUGCgGCAUa -3'
miRNA:   3'- -GCuuCUCUcGCCU---CUCCC-ACG-CGUAc -5'
21658 5' -56.4 NC_004812.1 + 93524 0.66 0.883683
Target:  5'- aCGAAGGccgaGGCGGGGcgcGGGUGCggcgGCGUGc -3'
miRNA:   3'- -GCUUCUc---UCGCCUCu--CCCACG----CGUAC- -5'
21658 5' -56.4 NC_004812.1 + 155446 0.66 0.876628
Target:  5'- gCGAcgAGGGAGCGGGGGgccGGGcucGCGCc-- -3'
miRNA:   3'- -GCU--UCUCUCGCCUCU---CCCa--CGCGuac -5'
21658 5' -56.4 NC_004812.1 + 86378 0.66 0.883683
Target:  5'- -nGGGuGGGCGGaAGAGGGUG-GCGg- -3'
miRNA:   3'- gcUUCuCUCGCC-UCUCCCACgCGUac -5'
21658 5' -56.4 NC_004812.1 + 100873 0.66 0.876628
Target:  5'- gGggGAG-GCgGGGGAGGGcGcCGCGg- -3'
miRNA:   3'- gCuuCUCuCG-CCUCUCCCaC-GCGUac -5'
21658 5' -56.4 NC_004812.1 + 64244 0.66 0.876628
Target:  5'- uCGGAGcgggcggcGGGGCGGAGAGGcGaUGUGUGUu -3'
miRNA:   3'- -GCUUC--------UCUCGCCUCUCC-C-ACGCGUAc -5'
21658 5' -56.4 NC_004812.1 + 5964 0.66 0.897123
Target:  5'- cCGggGAGGccGCGGGGgggcgagucgcGGGGUgguagGCGCcgGg -3'
miRNA:   3'- -GCuuCUCU--CGCCUC-----------UCCCA-----CGCGuaC- -5'
21658 5' -56.4 NC_004812.1 + 134684 0.66 0.873745
Target:  5'- gGAGGGGGGCGGAGccgccgagccgccGGcUGCGCGa- -3'
miRNA:   3'- gCUUCUCUCGCCUCu------------CCcACGCGUac -5'
21658 5' -56.4 NC_004812.1 + 5860 0.66 0.883683
Target:  5'- gCGggGGGAacaugggcGCGGGccGGGGG-GCGCGg- -3'
miRNA:   3'- -GCuuCUCU--------CGCCU--CUCCCaCGCGUac -5'
21658 5' -56.4 NC_004812.1 + 6596 0.66 0.890516
Target:  5'- gCGAaacAGAG-GCGGGGGuGGGUGgGUgggGUGg -3'
miRNA:   3'- -GCU---UCUCuCGCCUCU-CCCACgCG---UAC- -5'
21658 5' -56.4 NC_004812.1 + 110648 0.66 0.876628
Target:  5'- gCGGAGAcgcGGGCGGGGAGGG-GuCGgAg- -3'
miRNA:   3'- -GCUUCU---CUCGCCUCUCCCaC-GCgUac -5'
21658 5' -56.4 NC_004812.1 + 122217 0.66 0.883683
Target:  5'- aGAAGGGGcGCGagacGGGAGGGUGUGgGc- -3'
miRNA:   3'- gCUUCUCU-CGC----CUCUCCCACGCgUac -5'
21658 5' -56.4 NC_004812.1 + 30525 0.66 0.876628
Target:  5'- gCGAAGAaGGCGccGGGGGgcagGCGCAg- -3'
miRNA:   3'- -GCUUCUcUCGCcuCUCCCa---CGCGUac -5'
21658 5' -56.4 NC_004812.1 + 148502 0.66 0.883683
Target:  5'- uCGggGuuccGGGCcgggGGAGGGGGggcgGCGCGg- -3'
miRNA:   3'- -GCuuCu---CUCG----CCUCUCCCa---CGCGUac -5'
21658 5' -56.4 NC_004812.1 + 36865 0.66 0.903501
Target:  5'- cCGggGAGGccGCGGGGgggcgaguacgcGGGGUgguagGCGCcgGg -3'
miRNA:   3'- -GCuuCUCU--CGCCUC------------UCCCA-----CGCGuaC- -5'
21658 5' -56.4 NC_004812.1 + 117601 0.66 0.883683
Target:  5'- uCGggGuuccGGGCcgggGGAGGGGGggcgGCGCGg- -3'
miRNA:   3'- -GCuuCu---CUCG----CCUCUCCCa---CGCGUac -5'
21658 5' -56.4 NC_004812.1 + 71815 0.66 0.883683
Target:  5'- uGAGGuGguGGCGGAaggggGAGGGUGCgGCGg- -3'
miRNA:   3'- gCUUCuC--UCGCCU-----CUCCCACG-CGUac -5'
21658 5' -56.4 NC_004812.1 + 30861 0.66 0.890516
Target:  5'- cCGGccauGGGGGGCcGAGGGGGcGCGCu-- -3'
miRNA:   3'- -GCU----UCUCUCGcCUCUCCCaCGCGuac -5'
21658 5' -56.4 NC_004812.1 + 129648 0.66 0.890516
Target:  5'- uCGGAGAGGGCGGccgccAGGcGGcGcUGCGCGg- -3'
miRNA:   3'- -GCUUCUCUCGCC-----UCU-CC-C-ACGCGUac -5'
21658 5' -56.4 NC_004812.1 + 91075 0.66 0.897123
Target:  5'- uCGAAGAccggGGGCGaGGGGGGGcgccagggGCGCGc- -3'
miRNA:   3'- -GCUUCU----CUCGC-CUCUCCCa-------CGCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.