miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 5' -56.4 NC_004812.1 + 81519 0.97 0.01802
Target:  5'- uCGAAGAaGGCGGAGAGGGUGCGCAUGu -3'
miRNA:   3'- -GCUUCUcUCGCCUCUCCCACGCGUAC- -5'
21658 5' -56.4 NC_004812.1 + 70883 0.8 0.208344
Target:  5'- gCGggGGGGGCGGGGAGGGgGCGgGg- -3'
miRNA:   3'- -GCuuCUCUCGCCUCUCCCaCGCgUac -5'
21658 5' -56.4 NC_004812.1 + 83853 0.78 0.271693
Target:  5'- cCGggGGGAGCGGcGGGGGgcgGCGCu-- -3'
miRNA:   3'- -GCuuCUCUCGCCuCUCCCa--CGCGuac -5'
21658 5' -56.4 NC_004812.1 + 30868 0.78 0.278162
Target:  5'- gGAGGAGAGCGGGGccgcgggggccGGGGcUGCGCGa- -3'
miRNA:   3'- gCUUCUCUCGCCUC-----------UCCC-ACGCGUac -5'
21658 5' -56.4 NC_004812.1 + 149467 0.78 0.278162
Target:  5'- aGAAGGGGGgGGGGGGGGUGgGUggGUGa -3'
miRNA:   3'- gCUUCUCUCgCCUCUCCCACgCG--UAC- -5'
21658 5' -56.4 NC_004812.1 + 118566 0.78 0.278162
Target:  5'- aGAAGGGGGgGGGGGGGGUGgGUggGUGa -3'
miRNA:   3'- gCUUCUCUCgCCUCUCCCACgCG--UAC- -5'
21658 5' -56.4 NC_004812.1 + 156376 0.78 0.278162
Target:  5'- gGAGGAGAGCGGGGccgcgggggccGGGGcUGCGCGa- -3'
miRNA:   3'- gCUUCUCUCGCCUC-----------UCCC-ACGCGUac -5'
21658 5' -56.4 NC_004812.1 + 3117 0.78 0.291466
Target:  5'- gGGAGGGAGUgguGGGGAGGGUGuCGCGg- -3'
miRNA:   3'- gCUUCUCUCG---CCUCUCCCAC-GCGUac -5'
21658 5' -56.4 NC_004812.1 + 34018 0.78 0.291466
Target:  5'- gGGAGGGAGUgguGGGGAGGGUGuCGCGg- -3'
miRNA:   3'- gCUUCUCUCG---CCUCUCCCAC-GCGUac -5'
21658 5' -56.4 NC_004812.1 + 122561 0.78 0.305263
Target:  5'- gGggGGGGGCGGAG-GGGaGCGCGg- -3'
miRNA:   3'- gCuuCUCUCGCCUCuCCCaCGCGUac -5'
21658 5' -56.4 NC_004812.1 + 153462 0.78 0.305263
Target:  5'- gGggGGGGGCGGAG-GGGaGCGCGg- -3'
miRNA:   3'- gCuuCUCUCGCCUCuCCCaCGCGUac -5'
21658 5' -56.4 NC_004812.1 + 85997 0.77 0.334345
Target:  5'- aGggGAGGuGUGGGGuGGGUGUGCcgGg -3'
miRNA:   3'- gCuuCUCU-CGCCUCuCCCACGCGuaC- -5'
21658 5' -56.4 NC_004812.1 + 67456 0.77 0.344991
Target:  5'- aCGAGGAGgcgcaccaggacggaGGCGGGGAGGGUGC-CGUc -3'
miRNA:   3'- -GCUUCUC---------------UCGCCUCUCCCACGcGUAc -5'
21658 5' -56.4 NC_004812.1 + 150851 0.76 0.365403
Target:  5'- aCGggGAGA--GGAGAGGGgccggagGCGCGUGu -3'
miRNA:   3'- -GCuuCUCUcgCCUCUCCCa------CGCGUAC- -5'
21658 5' -56.4 NC_004812.1 + 25343 0.76 0.365403
Target:  5'- aCGggGAGA--GGAGAGGGgccggagGCGCGUGu -3'
miRNA:   3'- -GCuuCUCUcgCCUCUCCCa------CGCGUAC- -5'
21658 5' -56.4 NC_004812.1 + 148567 0.76 0.373472
Target:  5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3'
miRNA:   3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5'
21658 5' -56.4 NC_004812.1 + 148541 0.76 0.373472
Target:  5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3'
miRNA:   3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5'
21658 5' -56.4 NC_004812.1 + 148515 0.76 0.373472
Target:  5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3'
miRNA:   3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5'
21658 5' -56.4 NC_004812.1 + 148489 0.76 0.373472
Target:  5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3'
miRNA:   3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5'
21658 5' -56.4 NC_004812.1 + 148748 0.76 0.373472
Target:  5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3'
miRNA:   3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.