Results 1 - 20 of 217 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21658 | 5' | -56.4 | NC_004812.1 | + | 148748 | 0.76 | 0.373472 |
Target: 5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3' miRNA: 3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 148515 | 0.76 | 0.373472 |
Target: 5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3' miRNA: 3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 148541 | 0.76 | 0.373472 |
Target: 5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3' miRNA: 3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 148567 | 0.76 | 0.373472 |
Target: 5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3' miRNA: 3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 148593 | 0.76 | 0.373472 |
Target: 5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3' miRNA: 3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 148619 | 0.76 | 0.373472 |
Target: 5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3' miRNA: 3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 148645 | 0.76 | 0.373472 |
Target: 5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3' miRNA: 3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 148671 | 0.76 | 0.373472 |
Target: 5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3' miRNA: 3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 148722 | 0.76 | 0.373472 |
Target: 5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3' miRNA: 3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 148489 | 0.76 | 0.373472 |
Target: 5'- gGAGGGGAGgGcGAG-GGGUGCGCGg- -3' miRNA: 3'- gCUUCUCUCgC-CUCuCCCACGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 139524 | 0.76 | 0.373472 |
Target: 5'- aGAGGGGGGCGGGGAcagcgccacGGGggGCGCGUc -3' miRNA: 3'- gCUUCUCUCGCCUCU---------CCCa-CGCGUAc -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 54726 | 0.76 | 0.373472 |
Target: 5'- gGAGGGGAG-GGGGAGGGggccgGCGCGg- -3' miRNA: 3'- gCUUCUCUCgCCUCUCCCa----CGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 70883 | 0.8 | 0.208344 |
Target: 5'- gCGggGGGGGCGGGGAGGGgGCGgGg- -3' miRNA: 3'- -GCuuCUCUCGCCUCUCCCaCGCgUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 83853 | 0.78 | 0.271693 |
Target: 5'- cCGggGGGAGCGGcGGGGGgcgGCGCu-- -3' miRNA: 3'- -GCuuCUCUCGCCuCUCCCa--CGCGuac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 118566 | 0.78 | 0.278162 |
Target: 5'- aGAAGGGGGgGGGGGGGGUGgGUggGUGa -3' miRNA: 3'- gCUUCUCUCgCCUCUCCCACgCG--UAC- -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 156376 | 0.78 | 0.278162 |
Target: 5'- gGAGGAGAGCGGGGccgcgggggccGGGGcUGCGCGa- -3' miRNA: 3'- gCUUCUCUCGCCUC-----------UCCC-ACGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 3117 | 0.78 | 0.291466 |
Target: 5'- gGGAGGGAGUgguGGGGAGGGUGuCGCGg- -3' miRNA: 3'- gCUUCUCUCG---CCUCUCCCAC-GCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 122561 | 0.78 | 0.305263 |
Target: 5'- gGggGGGGGCGGAG-GGGaGCGCGg- -3' miRNA: 3'- gCuuCUCUCGCCUCuCCCaCGCGUac -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 85997 | 0.77 | 0.334345 |
Target: 5'- aGggGAGGuGUGGGGuGGGUGUGCcgGg -3' miRNA: 3'- gCuuCUCU-CGCCUCuCCCACGCGuaC- -5' |
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21658 | 5' | -56.4 | NC_004812.1 | + | 150851 | 0.76 | 0.365403 |
Target: 5'- aCGggGAGA--GGAGAGGGgccggagGCGCGUGu -3' miRNA: 3'- -GCuuCUCUcgCCUCUCCCa------CGCGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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