miRNA display CGI


Results 1 - 20 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21658 5' -56.4 NC_004812.1 + 34 0.68 0.821486
Target:  5'- --cGGGGGGCGGGGguucguucGGGGggGCGCGUu -3'
miRNA:   3'- gcuUCUCUCGCCUC--------UCCCa-CGCGUAc -5'
21658 5' -56.4 NC_004812.1 + 1977 0.71 0.638312
Target:  5'- gGggGAGGG-GGGGAGGGgugGCGgGUc -3'
miRNA:   3'- gCuuCUCUCgCCUCUCCCa--CGCgUAc -5'
21658 5' -56.4 NC_004812.1 + 2052 0.73 0.537228
Target:  5'- gCGggGGGcGCgGGGGAGGGgGCGCGc- -3'
miRNA:   3'- -GCuuCUCuCG-CCUCUCCCaCGCGUac -5'
21658 5' -56.4 NC_004812.1 + 2368 0.69 0.728968
Target:  5'- cCGGAGAGAgGCGG-GAcGGGUGUGgUGUGu -3'
miRNA:   3'- -GCUUCUCU-CGCCuCU-CCCACGC-GUAC- -5'
21658 5' -56.4 NC_004812.1 + 3117 0.78 0.291466
Target:  5'- gGGAGGGAGUgguGGGGAGGGUGuCGCGg- -3'
miRNA:   3'- gCUUCUCUCG---CCUCUCCCAC-GCGUac -5'
21658 5' -56.4 NC_004812.1 + 3390 0.71 0.648517
Target:  5'- uCGAGGGcGGCGGcGGAGGGcgccgGCGUGUGg -3'
miRNA:   3'- -GCUUCUcUCGCC-UCUCCCa----CGCGUAC- -5'
21658 5' -56.4 NC_004812.1 + 4139 0.66 0.890516
Target:  5'- uCGGAGAGGGCGGccgccAGGcGGcGcUGCGCGg- -3'
miRNA:   3'- -GCUUCUCUCGCC-----UCU-CC-C-ACGCGUac -5'
21658 5' -56.4 NC_004812.1 + 4635 0.67 0.854181
Target:  5'- gCGggGGGGcgggacgcccgcGCGGGGAGGGgcuCGCcgGc -3'
miRNA:   3'- -GCuuCUCU------------CGCCUCUCCCac-GCGuaC- -5'
21658 5' -56.4 NC_004812.1 + 4759 0.68 0.821486
Target:  5'- -aGAGAGAgGCGGAGAcGG-GCGCGg- -3'
miRNA:   3'- gcUUCUCU-CGCCUCUcCCaCGCGUac -5'
21658 5' -56.4 NC_004812.1 + 4786 0.73 0.537228
Target:  5'- gGGAGGGGGCGGGgcGAGGGcugGUGCGg- -3'
miRNA:   3'- gCUUCUCUCGCCU--CUCCCa--CGCGUac -5'
21658 5' -56.4 NC_004812.1 + 5099 0.68 0.810247
Target:  5'- cCGggGAG-GCGGGGgagucugggguccgGGGGgcggGCGCGg- -3'
miRNA:   3'- -GCuuCUCuCGCCUC--------------UCCCa---CGCGUac -5'
21658 5' -56.4 NC_004812.1 + 5860 0.66 0.883683
Target:  5'- gCGggGGGAacaugggcGCGGGccGGGGG-GCGCGg- -3'
miRNA:   3'- -GCuuCUCU--------CGCCU--CUCCCaCGCGUac -5'
21658 5' -56.4 NC_004812.1 + 5964 0.66 0.897123
Target:  5'- cCGggGAGGccGCGGGGgggcgagucgcGGGGUgguagGCGCcgGg -3'
miRNA:   3'- -GCuuCUCU--CGCCUC-----------UCCCA-----CGCGuaC- -5'
21658 5' -56.4 NC_004812.1 + 6090 0.68 0.821486
Target:  5'- aGGAGGGAGgGGAGGGGGaGgGgAg- -3'
miRNA:   3'- gCUUCUCUCgCCUCUCCCaCgCgUac -5'
21658 5' -56.4 NC_004812.1 + 6530 0.68 0.785141
Target:  5'- aGggGGGGGCGGggggccgAGGGGGcUGcCGCGa- -3'
miRNA:   3'- gCuuCUCUCGCC-------UCUCCC-AC-GCGUac -5'
21658 5' -56.4 NC_004812.1 + 6596 0.66 0.890516
Target:  5'- gCGAaacAGAG-GCGGGGGuGGGUGgGUgggGUGg -3'
miRNA:   3'- -GCU---UCUCuCGCCUCU-CCCACgCG---UAC- -5'
21658 5' -56.4 NC_004812.1 + 6638 0.73 0.527365
Target:  5'- -aGAGAGAGgGGAGGGGGUGgGgGa- -3'
miRNA:   3'- gcUUCUCUCgCCUCUCCCACgCgUac -5'
21658 5' -56.4 NC_004812.1 + 6665 0.76 0.379192
Target:  5'- gGggGAGAGCGGGGuugggauggacgacAGGGgGCGUGUGu -3'
miRNA:   3'- gCuuCUCUCGCCUC--------------UCCCaCGCGUAC- -5'
21658 5' -56.4 NC_004812.1 + 6977 0.71 0.628103
Target:  5'- gGggGGGGGgGGGGAaagGGGUGUGUGUu -3'
miRNA:   3'- gCuuCUCUCgCCUCU---CCCACGCGUAc -5'
21658 5' -56.4 NC_004812.1 + 7523 0.68 0.795143
Target:  5'- aGGAGGGAGgGGGGGcGGcGaUGCGCGg- -3'
miRNA:   3'- gCUUCUCUCgCCUCU-CC-C-ACGCGUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.