miRNA display CGI


Results 1 - 20 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 3' -57 NC_004812.1 + 127903 0.65 0.885107
Target:  5'- cGGCGCGGGGcGGcggucgcgaaauccAGGAaGGGcacgcGAAGCGCGu -3'
miRNA:   3'- -UCGCGCUCC-CC--------------UCCU-CCU-----CUUUGUGU- -5'
21706 3' -57 NC_004812.1 + 6650 0.66 0.865725
Target:  5'- gGGgGUGGGGGaGAuGGGGGAG-AGCGgGg -3'
miRNA:   3'- -UCgCGCUCCC-CU-CCUCCUCuUUGUgU- -5'
21706 3' -57 NC_004812.1 + 102941 0.66 0.850384
Target:  5'- gAGcCGCG-GGGGuGGcGGGGggGCGuCGg -3'
miRNA:   3'- -UC-GCGCuCCCCuCCuCCUCuuUGU-GU- -5'
21706 3' -57 NC_004812.1 + 154735 0.66 0.865725
Target:  5'- gGGgGCGGGcGGGGGucgcGGAGGAGCGg- -3'
miRNA:   3'- -UCgCGCUCcCCUCCu---CCUCUUUGUgu -5'
21706 3' -57 NC_004812.1 + 115207 0.66 0.848013
Target:  5'- aAGcCGCGAGGGcGAGGGgcguucguggcguuGGGGGugguGCACc -3'
miRNA:   3'- -UC-GCGCUCCC-CUCCU--------------CCUCUu---UGUGu -5'
21706 3' -57 NC_004812.1 + 56602 0.66 0.858155
Target:  5'- cGCGCGGGGGGGuGAuGAG-GugGCAg -3'
miRNA:   3'- uCGCGCUCCCCUcCUcCUCuUugUGU- -5'
21706 3' -57 NC_004812.1 + 122507 0.66 0.858155
Target:  5'- uGCG-GAGGGGcGGAGaGAGAGAgAa- -3'
miRNA:   3'- uCGCgCUCCCCuCCUC-CUCUUUgUgu -5'
21706 3' -57 NC_004812.1 + 7516 0.66 0.865725
Target:  5'- gAGCGaaaGGaGGGAGGGGGGGcgGCGa- -3'
miRNA:   3'- -UCGCg--CUcCCCUCCUCCUCuuUGUgu -5'
21706 3' -57 NC_004812.1 + 121873 0.66 0.865725
Target:  5'- cGGCGCaGAGGGGcGGGgccuGGGGcGggGcCGCAg -3'
miRNA:   3'- -UCGCG-CUCCCC-UCC----UCCU-CuuU-GUGU- -5'
21706 3' -57 NC_004812.1 + 146652 0.66 0.873086
Target:  5'- uGUGgGuGGGGAGGGgagcguuggaccGGAGGcaagAGCACAu -3'
miRNA:   3'- uCGCgCuCCCCUCCU------------CCUCU----UUGUGU- -5'
21706 3' -57 NC_004812.1 + 80614 0.66 0.858155
Target:  5'- gGGCucgGUGGGGGGuccgcGGuGGAGAGGgGCGg -3'
miRNA:   3'- -UCG---CGCUCCCCu----CCuCCUCUUUgUGU- -5'
21706 3' -57 NC_004812.1 + 27801 0.66 0.873086
Target:  5'- gAGgGCG-GGGccGGGGGGGGAGCGgGg -3'
miRNA:   3'- -UCgCGCuCCCcuCCUCCUCUUUGUgU- -5'
21706 3' -57 NC_004812.1 + 39852 0.66 0.858155
Target:  5'- cGGUGCGGGGGGccGGGGGcuccgccauGGCGCGu -3'
miRNA:   3'- -UCGCGCUCCCCu-CCUCCucu------UUGUGU- -5'
21706 3' -57 NC_004812.1 + 35659 0.66 0.858155
Target:  5'- cGCGCGGGGGucGGGGGcucuGugGCGCc -3'
miRNA:   3'- uCGCGCUCCCcuCCUCCu---CuuUGUGu -5'
21706 3' -57 NC_004812.1 + 6262 0.66 0.865725
Target:  5'- -cCGCGGucGGGGGGGAGcuagggccAGggGCACGg -3'
miRNA:   3'- ucGCGCU--CCCCUCCUCc-------UCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 151081 0.66 0.865725
Target:  5'- cGaCGaCGAcGGGGAGGAcGGcGGGGACGCc -3'
miRNA:   3'- uC-GC-GCU-CCCCUCCU-CC-UCUUUGUGu -5'
21706 3' -57 NC_004812.1 + 88704 0.66 0.850384
Target:  5'- cGGUaCGAGGGcGAGuGGGAGAGGCuGCGc -3'
miRNA:   3'- -UCGcGCUCCC-CUCcUCCUCUUUG-UGU- -5'
21706 3' -57 NC_004812.1 + 11439 0.66 0.864977
Target:  5'- cGGCGgGAGggugccgggagccGGGAGGGGGAaaggaaGAAACGgAa -3'
miRNA:   3'- -UCGCgCUC-------------CCCUCCUCCU------CUUUGUgU- -5'
21706 3' -57 NC_004812.1 + 71124 0.66 0.865725
Target:  5'- aGGCGCGGGcgccucGGGGGuucGGGGgcGCGCGa -3'
miRNA:   3'- -UCGCGCUCc-----CCUCCu--CCUCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 4850 0.66 0.864977
Target:  5'- uGCGgGGccGGGGAGGGGccgcggcccgcgcGAGAAACAa- -3'
miRNA:   3'- uCGCgCU--CCCCUCCUC-------------CUCUUUGUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.