miRNA display CGI


Results 1 - 20 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 3' -57 NC_004812.1 + 148481 0.78 0.245027
Target:  5'- uGCGCGGGGGaGGGGAGGGcGAGggguGCGCGg -3'
miRNA:   3'- uCGCGCUCCC-CUCCUCCU-CUU----UGUGU- -5'
21706 3' -57 NC_004812.1 + 57256 0.81 0.160991
Target:  5'- gGGCGCuGGGGGGGGGGGGGGcGACAa- -3'
miRNA:   3'- -UCGCG-CUCCCCUCCUCCUCuUUGUgu -5'
21706 3' -57 NC_004812.1 + 70880 0.81 0.178067
Target:  5'- uGCGCGGGGGGGGcGGGGAGGGggcggggaucucGCGCGg -3'
miRNA:   3'- uCGCGCUCCCCUC-CUCCUCUU------------UGUGU- -5'
21706 3' -57 NC_004812.1 + 137990 0.8 0.187195
Target:  5'- gGGgGgGGGGGGGGGGGGGGGAGCGgGg -3'
miRNA:   3'- -UCgCgCUCCCCUCCUCCUCUUUGUgU- -5'
21706 3' -57 NC_004812.1 + 154772 0.8 0.190486
Target:  5'- uGCGCggggaGAGGGGAGGAGGGGGGaggagaggcgaggcGCGCAg -3'
miRNA:   3'- uCGCG-----CUCCCCUCCUCCUCUU--------------UGUGU- -5'
21706 3' -57 NC_004812.1 + 155874 0.8 0.206691
Target:  5'- cGCGCGcGGcGGGGGAGGGGAGGgGCGg -3'
miRNA:   3'- uCGCGCuCC-CCUCCUCCUCUUUgUGU- -5'
21706 3' -57 NC_004812.1 + 100116 0.8 0.211833
Target:  5'- cGgGCGGGGGaGGGGAGGGGAGGCGu- -3'
miRNA:   3'- uCgCGCUCCC-CUCCUCCUCUUUGUgu -5'
21706 3' -57 NC_004812.1 + 4775 0.8 0.211833
Target:  5'- gGGCGCGguGGGGGAGGGGGcGggGCGa- -3'
miRNA:   3'- -UCGCGC--UCCCCUCCUCCuCuuUGUgu -5'
21706 3' -57 NC_004812.1 + 156182 0.79 0.239209
Target:  5'- cGCGCGAggaaGGGGAGGGGGGGAGggggccGCugGg -3'
miRNA:   3'- uCGCGCU----CCCCUCCUCCUCUU------UGugU- -5'
21706 3' -57 NC_004812.1 + 127477 0.82 0.156959
Target:  5'- gGGCGcCGGGGGGAGGGGGGGAGGgGu- -3'
miRNA:   3'- -UCGC-GCUCCCCUCCUCCUCUUUgUgu -5'
21706 3' -57 NC_004812.1 + 118499 0.82 0.156959
Target:  5'- aGGCgagGCGAGGGGAGGGGGAGGAGgGa- -3'
miRNA:   3'- -UCG---CGCUCCCCUCCUCCUCUUUgUgu -5'
21706 3' -57 NC_004812.1 + 54721 0.82 0.156959
Target:  5'- aGGgGgGAGGGGAGGGGGAGGgggccGGCGCGg -3'
miRNA:   3'- -UCgCgCUCCCCUCCUCCUCU-----UUGUGU- -5'
21706 3' -57 NC_004812.1 + 122555 0.87 0.071692
Target:  5'- gGGCGCGGGGGGGGGcGGAGGggAGCGCGg -3'
miRNA:   3'- -UCGCGCUCCCCUCCuCCUCU--UUGUGU- -5'
21706 3' -57 NC_004812.1 + 155549 0.84 0.103557
Target:  5'- gGGCGgGAGGGGcgggggaGGGGGGAGggGCGCGc -3'
miRNA:   3'- -UCGCgCUCCCC-------UCCUCCUCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 116223 0.83 0.124599
Target:  5'- gGGCGCGcaaauggggggGGGGGGGGGGGGGGAACAgAa -3'
miRNA:   3'- -UCGCGC-----------UCCCCUCCUCCUCUUUGUgU- -5'
21706 3' -57 NC_004812.1 + 154946 0.82 0.137079
Target:  5'- cGGaCGCGGGGGGGGGGGGAGGGgggacgggcgggccGCGCGg -3'
miRNA:   3'- -UC-GCGCUCCCCUCCUCCUCUU--------------UGUGU- -5'
21706 3' -57 NC_004812.1 + 155243 0.82 0.13814
Target:  5'- uGCGCGAGGGcGGGccGAGGGGggGCGCGg -3'
miRNA:   3'- uCGCGCUCCC-CUC--CUCCUCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 47837 0.82 0.149168
Target:  5'- aAGgGCGguGGGGGAGGGGGAGAGGgGCGc -3'
miRNA:   3'- -UCgCGC--UCCCCUCCUCCUCUUUgUGU- -5'
21706 3' -57 NC_004812.1 + 7952 0.82 0.153019
Target:  5'- gGGCGCGuccGGGGGGGGccGAGAGACGCGg -3'
miRNA:   3'- -UCGCGC---UCCCCUCCucCUCUUUGUGU- -5'
21706 3' -57 NC_004812.1 + 72326 0.82 0.156561
Target:  5'- gGGCGCGGccgggcgggccgcGGGGGGGAGGGGggGCGgGg -3'
miRNA:   3'- -UCGCGCU-------------CCCCUCCUCCUCuuUGUgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.