Results 1 - 20 of 337 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21706 | 3' | -57 | NC_004812.1 | + | 19 | 0.7 | 0.664387 |
Target: 5'- gGGCGCGcgcguuuucGGGGGGcGGGGGuucguucggGGggGCGCGu -3' miRNA: 3'- -UCGCGC---------UCCCCU-CCUCC---------UCuuUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 196 | 0.69 | 0.724495 |
Target: 5'- cGCGCGccgccGGGGGAGGGcccGGGucGCGCAg -3' miRNA: 3'- uCGCGC-----UCCCCUCCUc--CUCuuUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 256 | 0.75 | 0.362416 |
Target: 5'- cGCGCGGGaGGAGGGGGGGGucucccGCGCGc -3' miRNA: 3'- uCGCGCUCcCCUCCUCCUCUu-----UGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 623 | 0.75 | 0.362416 |
Target: 5'- cGCGCGAGGGGAGGAcagccGGGAucgaguGCGCc -3' miRNA: 3'- uCGCGCUCCCCUCCUc----CUCUu-----UGUGu -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 677 | 0.67 | 0.798992 |
Target: 5'- cGGCGCGAGGGGAGcGcguccccGGGuccGGAGCu-- -3' miRNA: 3'- -UCGCGCUCCCCUC-C-------UCCu--CUUUGugu -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 728 | 0.69 | 0.73429 |
Target: 5'- cGGCGCGGucgccGGcGGGGGuGGGGGcGGCGCGa -3' miRNA: 3'- -UCGCGCU-----CC-CCUCCuCCUCU-UUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 1969 | 0.84 | 0.112299 |
Target: 5'- gGGCGcCGGGGGGAGGGGGGGAgggGugGCGg -3' miRNA: 3'- -UCGC-GCUCCCCUCCUCCUCU---UugUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 2047 | 0.76 | 0.331605 |
Target: 5'- cGGCgGCGGGGGGcgcGGGGGAGggGgCGCGc -3' miRNA: 3'- -UCG-CGCUCCCCu--CCUCCUCuuU-GUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 3081 | 0.67 | 0.817405 |
Target: 5'- cGCGCGucgguccaggcGGGcGGGGcGGGGGAGGCGCc -3' miRNA: 3'- uCGCGCu----------CCC-CUCC-UCCUCUUUGUGu -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 3102 | 0.78 | 0.26948 |
Target: 5'- gGGgGgGAGGGGAGGGGGAGGGAg--- -3' miRNA: 3'- -UCgCgCUCCCCUCCUCCUCUUUgugu -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 4631 | 0.68 | 0.790895 |
Target: 5'- aGGgGCGGGGGGGcGGgacgcccgcgcgGGGAGggGCuCGc -3' miRNA: 3'- -UCgCGCUCCCCU-CC------------UCCUCuuUGuGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 4775 | 0.8 | 0.211833 |
Target: 5'- gGGCGCGguGGGGGAGGGGGcGggGCGa- -3' miRNA: 3'- -UCGCGC--UCCCCUCCUCCuCuuUGUgu -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 4850 | 0.66 | 0.864977 |
Target: 5'- uGCGgGGccGGGGAGGGGccgcggcccgcgcGAGAAACAa- -3' miRNA: 3'- uCGCgCU--CCCCUCCUC-------------CUCUUUGUgu -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 4986 | 0.67 | 0.825919 |
Target: 5'- cGCGCGGGGGGccgugcgccgcaGGGcGGGcGGggGCgGCAg -3' miRNA: 3'- uCGCGCUCCCC------------UCC-UCC-UCuuUG-UGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 5127 | 0.67 | 0.799885 |
Target: 5'- gGGgGCGGGcGcGGAGGcGGGAGGGcCGCGg -3' miRNA: 3'- -UCgCGCUC-C-CCUCC-UCCUCUUuGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 5198 | 0.72 | 0.545989 |
Target: 5'- aGGgGCGGGGGcuccccagaagcagaGAGGggcgggggcucccGGGAGAAGCACAa -3' miRNA: 3'- -UCgCGCUCCC---------------CUCC-------------UCCUCUUUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 5281 | 0.75 | 0.37855 |
Target: 5'- gAG-GCGGGGGGAggcccgGGAGGAGAAGCcCGa -3' miRNA: 3'- -UCgCGCUCCCCU------CCUCCUCUUUGuGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 5341 | 0.78 | 0.257016 |
Target: 5'- gAG-GCGGGGGGAGGcccGGGAGAGGCgGCAg -3' miRNA: 3'- -UCgCGCUCCCCUCC---UCCUCUUUG-UGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 5387 | 0.73 | 0.503904 |
Target: 5'- cGGCGgGAGGGGGGucGGGGucucccAGGGACGCGg -3' miRNA: 3'- -UCGCgCUCCCCUC--CUCC------UCUUUGUGU- -5' |
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21706 | 3' | -57 | NC_004812.1 | + | 5483 | 0.72 | 0.562946 |
Target: 5'- gGGgGCGAGGGucacccacGGGAGGAGGAcgccgggcgccGCGCAg -3' miRNA: 3'- -UCgCGCUCCCc-------UCCUCCUCUU-----------UGUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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