miRNA display CGI


Results 1 - 20 of 337 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21706 3' -57 NC_004812.1 + 118707 1.08 0.002677
Target:  5'- cAGCGCGAGGGGAGGAGGAGAAACACAc -3'
miRNA:   3'- -UCGCGCUCCCCUCCUCCUCUUUGUGU- -5'
21706 3' -57 NC_004812.1 + 149608 1.08 0.002677
Target:  5'- cAGCGCGAGGGGAGGAGGAGAAACACAc -3'
miRNA:   3'- -UCGCGCUCCCCUCCUCCUCUUUGUGU- -5'
21706 3' -57 NC_004812.1 + 106753 0.87 0.069804
Target:  5'- gGGCGCGGGGGGGucGGAGGAGggGCGg- -3'
miRNA:   3'- -UCGCGCUCCCCU--CCUCCUCuuUGUgu -5'
21706 3' -57 NC_004812.1 + 122555 0.87 0.071692
Target:  5'- gGGCGCGGGGGGGGGcGGAGGggAGCGCGg -3'
miRNA:   3'- -UCGCGCUCCCCUCCuCCUCU--UUGUGU- -5'
21706 3' -57 NC_004812.1 + 153456 0.87 0.071692
Target:  5'- gGGCGCGGGGGGGGGcGGAGGggAGCGCGg -3'
miRNA:   3'- -UCGCGCUCCCCUCCuCCUCU--UUGUGU- -5'
21706 3' -57 NC_004812.1 + 40744 0.87 0.07363
Target:  5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3'
miRNA:   3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 40686 0.87 0.07363
Target:  5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3'
miRNA:   3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 40646 0.87 0.07363
Target:  5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3'
miRNA:   3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 40606 0.87 0.07363
Target:  5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3'
miRNA:   3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 40548 0.87 0.07363
Target:  5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3'
miRNA:   3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 40509 0.87 0.07363
Target:  5'- gGGCGCGGGGGaGGGGAGG-GggGCGCGg -3'
miRNA:   3'- -UCGCGCUCCC-CUCCUCCuCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 155549 0.84 0.103557
Target:  5'- gGGCGgGAGGGGcgggggaGGGGGGAGggGCGCGc -3'
miRNA:   3'- -UCGCgCUCCCC-------UCCUCCUCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 30040 0.84 0.103557
Target:  5'- gGGCGgGAGGGGcgggggaGGGGGGAGggGCGCGc -3'
miRNA:   3'- -UCGCgCUCCCC-------UCCUCCUCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 1969 0.84 0.112299
Target:  5'- gGGCGcCGGGGGGAGGGGGGGAgggGugGCGg -3'
miRNA:   3'- -UCGC-GCUCCCCUCCUCCUCU---UugUGU- -5'
21706 3' -57 NC_004812.1 + 116223 0.83 0.124599
Target:  5'- gGGCGCGcaaauggggggGGGGGGGGGGGGGGAACAgAa -3'
miRNA:   3'- -UCGCGC-----------UCCCCUCCUCCUCUUUGUgU- -5'
21706 3' -57 NC_004812.1 + 29438 0.82 0.137079
Target:  5'- cGGaCGCGGGGGGGGGGGGAGGGgggacgggcgggccGCGCGg -3'
miRNA:   3'- -UC-GCGCUCCCCUCCUCCUCUU--------------UGUGU- -5'
21706 3' -57 NC_004812.1 + 154946 0.82 0.137079
Target:  5'- cGGaCGCGGGGGGGGGGGGAGGGgggacgggcgggccGCGCGg -3'
miRNA:   3'- -UC-GCGCUCCCCUCCUCCUCUU--------------UGUGU- -5'
21706 3' -57 NC_004812.1 + 29735 0.82 0.13814
Target:  5'- uGCGCGAGGGcGGGccGAGGGGggGCGCGg -3'
miRNA:   3'- uCGCGCUCCC-CUC--CUCCUCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 155243 0.82 0.13814
Target:  5'- uGCGCGAGGGcGGGccGAGGGGggGCGCGg -3'
miRNA:   3'- uCGCGCUCCC-CUC--CUCCUCuuUGUGU- -5'
21706 3' -57 NC_004812.1 + 47837 0.82 0.149168
Target:  5'- aAGgGCGguGGGGGAGGGGGAGAGGgGCGc -3'
miRNA:   3'- -UCgCGC--UCCCCUCCUCCUCUUUgUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.