miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21713 3' -58.5 NC_004812.1 + 113493 0.66 0.823036
Target:  5'- gCUGcGCCaGGAGGguuucgUgGAGGCCGugGCCUCg -3'
miRNA:   3'- -GACuCGG-CCUUU------GgCUCCGGC--UGGAG- -5'
21713 3' -58.5 NC_004812.1 + 67489 0.66 0.831314
Target:  5'- -cGGGCUGGcgcCCGcGGGCCGucgucucgcgcGCCUCg -3'
miRNA:   3'- gaCUCGGCCuuuGGC-UCCGGC-----------UGGAG- -5'
21713 3' -58.5 NC_004812.1 + 78631 0.66 0.830494
Target:  5'- -gGGGCUGuucguuggaagacGggGCCGGGGCCc-CCUCu -3'
miRNA:   3'- gaCUCGGC-------------CuuUGGCUCCGGcuGGAG- -5'
21713 3' -58.5 NC_004812.1 + 73179 0.66 0.817988
Target:  5'- -aGGGCCGGuacagggcgugggcGGgCGGGGCCGGgacguCCUCg -3'
miRNA:   3'- gaCUCGGCCu-------------UUgGCUCCGGCU-----GGAG- -5'
21713 3' -58.5 NC_004812.1 + 128567 0.66 0.805986
Target:  5'- -cGAGCaGGAAGgaGAGGCCG-CCg- -3'
miRNA:   3'- gaCUCGgCCUUUggCUCCGGCuGGag -5'
21713 3' -58.5 NC_004812.1 + 16879 0.66 0.81459
Target:  5'- cCUG-GUCGGcguGGCCGAGGCCaucaGCCa- -3'
miRNA:   3'- -GACuCGGCCu--UUGGCUCCGGc---UGGag -5'
21713 3' -58.5 NC_004812.1 + 45755 0.66 0.823036
Target:  5'- -gGAGCCcgaggGGAGACggCGAGGgCGucuCCUCg -3'
miRNA:   3'- gaCUCGG-----CCUUUG--GCUCCgGCu--GGAG- -5'
21713 3' -58.5 NC_004812.1 + 84094 0.66 0.823036
Target:  5'- -cGGGaCGGcGACCGAGcGCCGccGCCUa -3'
miRNA:   3'- gaCUCgGCCuUUGGCUC-CGGC--UGGAg -5'
21713 3' -58.5 NC_004812.1 + 94626 0.66 0.831314
Target:  5'- cCUGGGCgCGGAGAgaCGGGcGCgGgcGCCUCu -3'
miRNA:   3'- -GACUCG-GCCUUUg-GCUC-CGgC--UGGAG- -5'
21713 3' -58.5 NC_004812.1 + 127959 0.66 0.812026
Target:  5'- -cGAGUgcgccucgccgcggCGGAAGuCCGGGGCgccggcggcggCGGCCUCg -3'
miRNA:   3'- gaCUCG--------------GCCUUU-GGCUCCG-----------GCUGGAG- -5'
21713 3' -58.5 NC_004812.1 + 31358 0.66 0.831314
Target:  5'- -aGaAGUCGucGGCCGGGGCCu-CCUCg -3'
miRNA:   3'- gaC-UCGGCcuUUGGCUCCGGcuGGAG- -5'
21713 3' -58.5 NC_004812.1 + 25934 0.66 0.826367
Target:  5'- -aGAGCCGGAcgaggucccGCCGAGaCCGcgaucuaccauccccGCCUCc -3'
miRNA:   3'- gaCUCGGCCUu--------UGGCUCcGGC---------------UGGAG- -5'
21713 3' -58.5 NC_004812.1 + 29982 0.66 0.805986
Target:  5'- ---uGCCGGAGGCUGccGUCGcCCUCg -3'
miRNA:   3'- gacuCGGCCUUUGGCucCGGCuGGAG- -5'
21713 3' -58.5 NC_004812.1 + 63221 0.66 0.823036
Target:  5'- -cGGGCgGGGAGgaCGAGGC-GGCCUUu -3'
miRNA:   3'- gaCUCGgCCUUUg-GCUCCGgCUGGAG- -5'
21713 3' -58.5 NC_004812.1 + 100073 0.66 0.813737
Target:  5'- -gGAGUgugauCGGggGCCG-GGCCGccggagcGCCUUa -3'
miRNA:   3'- gaCUCG-----GCCuuUGGCuCCGGC-------UGGAG- -5'
21713 3' -58.5 NC_004812.1 + 49246 0.66 0.81459
Target:  5'- -cGcGCgGGggGcguCCGGGGCCGACUcCg -3'
miRNA:   3'- gaCuCGgCCuuU---GGCUCCGGCUGGaG- -5'
21713 3' -58.5 NC_004812.1 + 49909 0.66 0.831314
Target:  5'- -aGGGCCccccGGGGcCCGAcGCCGACCg- -3'
miRNA:   3'- gaCUCGG----CCUUuGGCUcCGGCUGGag -5'
21713 3' -58.5 NC_004812.1 + 54625 0.66 0.823036
Target:  5'- -gGGGCCGGAGAggcCCGcGGGCUcACCa- -3'
miRNA:   3'- gaCUCGGCCUUU---GGC-UCCGGcUGGag -5'
21713 3' -58.5 NC_004812.1 + 142191 0.66 0.79723
Target:  5'- gCUG-GCCGGcg--CGGGGCUGGCCg- -3'
miRNA:   3'- -GACuCGGCCuuugGCUCCGGCUGGag -5'
21713 3' -58.5 NC_004812.1 + 152906 0.66 0.805986
Target:  5'- ---cGCCGGcgccGCCGccGCCGACCUg -3'
miRNA:   3'- gacuCGGCCuu--UGGCucCGGCUGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.