miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21713 3' -58.5 NC_004812.1 + 121271 0.72 0.477136
Target:  5'- -cGGGCgGGGAcacgcggcCCGGGGCCG-CCUCg -3'
miRNA:   3'- gaCUCGgCCUUu-------GGCUCCGGCuGGAG- -5'
21713 3' -58.5 NC_004812.1 + 156031 0.74 0.373347
Target:  5'- -gGGGCCGGggGCCGcgccgcgggacGGGCgGGCgUCg -3'
miRNA:   3'- gaCUCGGCCuuUGGC-----------UCCGgCUGgAG- -5'
21713 3' -58.5 NC_004812.1 + 97988 0.74 0.381397
Target:  5'- gUGGGCCGGGAggcACgGGGGCuCGGgCUCg -3'
miRNA:   3'- gACUCGGCCUU---UGgCUCCG-GCUgGAG- -5'
21713 3' -58.5 NC_004812.1 + 91515 0.74 0.39784
Target:  5'- -cGAGCCGGcgGCCGGGGCCuGCg-- -3'
miRNA:   3'- gaCUCGGCCuuUGGCUCCGGcUGgag -5'
21713 3' -58.5 NC_004812.1 + 100279 0.73 0.432056
Target:  5'- -cGGGcCCGGggGCCGAGcacggacgcGCCGcCCUCc -3'
miRNA:   3'- gaCUC-GGCCuuUGGCUC---------CGGCuGGAG- -5'
21713 3' -58.5 NC_004812.1 + 134763 0.73 0.440875
Target:  5'- -gGAGUCGGAcGCCGAGGgCgCGAcgcCCUCg -3'
miRNA:   3'- gaCUCGGCCUuUGGCUCC-G-GCU---GGAG- -5'
21713 3' -58.5 NC_004812.1 + 5062 0.72 0.453391
Target:  5'- -gGGGCCcgggcgggagacucgGGggGCCGGGGuCCGGCCg- -3'
miRNA:   3'- gaCUCGG---------------CCuuUGGCUCC-GGCUGGag -5'
21713 3' -58.5 NC_004812.1 + 16224 0.72 0.467929
Target:  5'- -cGcGCCGGAGGCgGAgccGGCCGGCCa- -3'
miRNA:   3'- gaCuCGGCCUUUGgCU---CCGGCUGGag -5'
21713 3' -58.5 NC_004812.1 + 50441 0.72 0.467929
Target:  5'- cCUGcGGCgcgaGGccGCCGAGGCCGAgCUCg -3'
miRNA:   3'- -GAC-UCGg---CCuuUGGCUCCGGCUgGAG- -5'
21713 3' -58.5 NC_004812.1 + 33536 0.74 0.373347
Target:  5'- -aGAGCCGcGAGGCCGAcgacgaccGGCcCGugCUCa -3'
miRNA:   3'- gaCUCGGC-CUUUGGCU--------CCG-GCugGAG- -5'
21713 3' -58.5 NC_004812.1 + 151384 0.74 0.365414
Target:  5'- --cGGCCGcGAGGCCGAcgccGGCuCGGCCUCg -3'
miRNA:   3'- gacUCGGC-CUUUGGCU----CCG-GCUGGAG- -5'
21713 3' -58.5 NC_004812.1 + 46295 0.74 0.357597
Target:  5'- --cGGCCGGAGGCCGcGGCgGGCCg- -3'
miRNA:   3'- gacUCGGCCUUUGGCuCCGgCUGGag -5'
21713 3' -58.5 NC_004812.1 + 68232 0.79 0.186267
Target:  5'- -gGuGCgCGGggGCCGGGGCCucGGCCUCg -3'
miRNA:   3'- gaCuCG-GCCuuUGGCUCCGG--CUGGAG- -5'
21713 3' -58.5 NC_004812.1 + 109522 0.78 0.215564
Target:  5'- -gGAGCCGGggGCCGAGGCgccccCGGCgaUCg -3'
miRNA:   3'- gaCUCGGCCuuUGGCUCCG-----GCUGg-AG- -5'
21713 3' -58.5 NC_004812.1 + 136917 0.78 0.231644
Target:  5'- uUGGGCCcGAGGCCGAccgGGCCGcCCUCg -3'
miRNA:   3'- gACUCGGcCUUUGGCU---CCGGCuGGAG- -5'
21713 3' -58.5 NC_004812.1 + 122083 0.77 0.26683
Target:  5'- gCUGGGCCuGAGcGCCGGGGCgGGCCUg -3'
miRNA:   3'- -GACUCGGcCUU-UGGCUCCGgCUGGAg -5'
21713 3' -58.5 NC_004812.1 + 13025 0.76 0.285988
Target:  5'- cCUGAucGCCGGggGuCgCGGGGCCGGCCcCg -3'
miRNA:   3'- -GACU--CGGCCuuU-G-GCUCCGGCUGGaG- -5'
21713 3' -58.5 NC_004812.1 + 73955 0.76 0.306213
Target:  5'- -aGAGCCGGAAGCCGucGCCcugGGCgUCg -3'
miRNA:   3'- gaCUCGGCCUUUGGCucCGG---CUGgAG- -5'
21713 3' -58.5 NC_004812.1 + 32666 0.75 0.334858
Target:  5'- gCUGGGCUcgcgcgggaGGAGGCCG-GGCCGGCC-Cg -3'
miRNA:   3'- -GACUCGG---------CCUUUGGCuCCGGCUGGaG- -5'
21713 3' -58.5 NC_004812.1 + 111720 0.75 0.349899
Target:  5'- -aGAGCCucguGGAGAuauUCGAGGCCGACCcCg -3'
miRNA:   3'- gaCUCGG----CCUUU---GGCUCCGGCUGGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.