miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21713 3' -58.5 NC_004812.1 + 134042 1.09 0.001645
Target:  5'- uCUGAGCCGGAAACCGAGGCCGACCUCg -3'
miRNA:   3'- -GACUCGGCCUUUGGCUCCGGCUGGAG- -5'
21713 3' -58.5 NC_004812.1 + 22498 0.81 0.145209
Target:  5'- gUGAGCuCGGAuacgGACuCGAGGUCGGCCUCu -3'
miRNA:   3'- gACUCG-GCCU----UUG-GCUCCGGCUGGAG- -5'
21713 3' -58.5 NC_004812.1 + 68232 0.79 0.186267
Target:  5'- -gGuGCgCGGggGCCGGGGCCucGGCCUCg -3'
miRNA:   3'- gaCuCG-GCCuuUGGCUCCGG--CUGGAG- -5'
21713 3' -58.5 NC_004812.1 + 109522 0.78 0.215564
Target:  5'- -gGAGCCGGggGCCGAGGCgccccCGGCgaUCg -3'
miRNA:   3'- gaCUCGGCCuuUGGCUCCG-----GCUGg-AG- -5'
21713 3' -58.5 NC_004812.1 + 136917 0.78 0.231644
Target:  5'- uUGGGCCcGAGGCCGAccgGGCCGcCCUCg -3'
miRNA:   3'- gACUCGGcCUUUGGCU---CCGGCuGGAG- -5'
21713 3' -58.5 NC_004812.1 + 143560 0.77 0.242918
Target:  5'- cCUGucGCUGGGggcGACCGGGGCCGGCCcCg -3'
miRNA:   3'- -GACu-CGGCCU---UUGGCUCCGGCUGGaG- -5'
21713 3' -58.5 NC_004812.1 + 76977 0.77 0.260679
Target:  5'- -cGGGCCGGGGccGCCGGccacGGCCGcCCUCa -3'
miRNA:   3'- gaCUCGGCCUU--UGGCU----CCGGCuGGAG- -5'
21713 3' -58.5 NC_004812.1 + 122083 0.77 0.26683
Target:  5'- gCUGGGCCuGAGcGCCGGGGCgGGCCUg -3'
miRNA:   3'- -GACUCGGcCUU-UGGCUCCGgCUGGAg -5'
21713 3' -58.5 NC_004812.1 + 152984 0.77 0.26683
Target:  5'- gCUGGGCCuGAGcGCCGGGGCgGGCCUg -3'
miRNA:   3'- -GACUCGGcCUU-UGGCUCCGgCUGGAg -5'
21713 3' -58.5 NC_004812.1 + 64303 0.76 0.273098
Target:  5'- -cGGGCggCGGGgcGACCGGGGCCGACgUCu -3'
miRNA:   3'- gaCUCG--GCCU--UUGGCUCCGGCUGgAG- -5'
21713 3' -58.5 NC_004812.1 + 130721 0.76 0.285988
Target:  5'- gCUGGGCgCGGgcGCCGcggaGGGCCGGCCg- -3'
miRNA:   3'- -GACUCG-GCCuuUGGC----UCCGGCUGGag -5'
21713 3' -58.5 NC_004812.1 + 13025 0.76 0.285988
Target:  5'- cCUGAucGCCGGggGuCgCGGGGCCGGCCcCg -3'
miRNA:   3'- -GACU--CGGCCuuU-G-GCUCCGGCUGGaG- -5'
21713 3' -58.5 NC_004812.1 + 73955 0.76 0.306213
Target:  5'- -aGAGCCGGAAGCCGucGCCcugGGCgUCg -3'
miRNA:   3'- gaCUCGGCCUUUGGCucCGG---CUGgAG- -5'
21713 3' -58.5 NC_004812.1 + 78314 0.76 0.306214
Target:  5'- -cGGGgCGGggGCgGAGGgcCCGGCCUCg -3'
miRNA:   3'- gaCUCgGCCuuUGgCUCC--GGCUGGAG- -5'
21713 3' -58.5 NC_004812.1 + 107768 0.75 0.332644
Target:  5'- -gGAGCCGGuccucgcggagcgguACUGGGGCCGGCCg- -3'
miRNA:   3'- gaCUCGGCCuu-------------UGGCUCCGGCUGGag -5'
21713 3' -58.5 NC_004812.1 + 32666 0.75 0.334858
Target:  5'- gCUGGGCUcgcgcgggaGGAGGCCG-GGCCGGCC-Cg -3'
miRNA:   3'- -GACUCGG---------CCUUUGGCuCCGGCUGGaG- -5'
21713 3' -58.5 NC_004812.1 + 111720 0.75 0.349899
Target:  5'- -aGAGCCucguGGAGAuauUCGAGGCCGACCcCg -3'
miRNA:   3'- gaCUCGG----CCUUU---GGCUCCGGCUGGaG- -5'
21713 3' -58.5 NC_004812.1 + 46295 0.74 0.357597
Target:  5'- --cGGCCGGAGGCCGcGGCgGGCCg- -3'
miRNA:   3'- gacUCGGCCUUUGGCuCCGgCUGGag -5'
21713 3' -58.5 NC_004812.1 + 25876 0.74 0.365414
Target:  5'- --cGGCCGcGAGGCCGAcgccGGCuCGGCCUCg -3'
miRNA:   3'- gacUCGGC-CUUUGGCU----CCG-GCUGGAG- -5'
21713 3' -58.5 NC_004812.1 + 151384 0.74 0.365414
Target:  5'- --cGGCCGcGAGGCCGAcgccGGCuCGGCCUCg -3'
miRNA:   3'- gacUCGGC-CUUUGGCU----CCG-GCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.