miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21713 3' -58.5 NC_004812.1 + 98 0.7 0.613305
Target:  5'- -cGGGCCGGGGcgcGCgCGGGGCCGggaGCC-Cg -3'
miRNA:   3'- gaCUCGGCCUU---UG-GCUCCGGC---UGGaG- -5'
21713 3' -58.5 NC_004812.1 + 1292 0.68 0.703175
Target:  5'- -aGGGuccCCGGAGGCgGGGcGCCGACCc- -3'
miRNA:   3'- gaCUC---GGCCUUUGgCUC-CGGCUGGag -5'
21713 3' -58.5 NC_004812.1 + 1438 0.68 0.732391
Target:  5'- -gGGGCCGG-GGCCGcgaGGGCCGGgCa- -3'
miRNA:   3'- gaCUCGGCCuUUGGC---UCCGGCUgGag -5'
21713 3' -58.5 NC_004812.1 + 2451 0.66 0.812026
Target:  5'- -cGAGUgcgccucgccgcggCGGAAGuCCGGGGCgccggcggcggCGGCCUCg -3'
miRNA:   3'- gaCUCG--------------GCCUUU-GGCUCCG-----------GCUGGAG- -5'
21713 3' -58.5 NC_004812.1 + 3058 0.66 0.805986
Target:  5'- -cGAGCaGGAAGgaGAGGCCG-CCg- -3'
miRNA:   3'- gaCUCGgCCUUUggCUCCGGCuGGag -5'
21713 3' -58.5 NC_004812.1 + 3503 0.68 0.703175
Target:  5'- -cGGGCgCGGGc-CCGGGGCCGGCg-- -3'
miRNA:   3'- gaCUCG-GCCUuuGGCUCCGGCUGgag -5'
21713 3' -58.5 NC_004812.1 + 3537 0.69 0.623337
Target:  5'- -gGGGCCGcGgcGCCG-GGCCGGCuCUUc -3'
miRNA:   3'- gaCUCGGC-CuuUGGCuCCGGCUG-GAG- -5'
21713 3' -58.5 NC_004812.1 + 5040 0.68 0.722724
Target:  5'- -cGGGCCGGggGCgcgCGAGGgcgccgcgcccCCGGCCcCg -3'
miRNA:   3'- gaCUCGGCCuuUG---GCUCC-----------GGCUGGaG- -5'
21713 3' -58.5 NC_004812.1 + 5062 0.72 0.453391
Target:  5'- -gGGGCCcgggcgggagacucgGGggGCCGGGGuCCGGCCg- -3'
miRNA:   3'- gaCUCGG---------------CCuuUGGCUCC-GGCUGGag -5'
21713 3' -58.5 NC_004812.1 + 5398 0.69 0.65344
Target:  5'- -gGGGCCGGggG-CGucGCCGGCCcCg -3'
miRNA:   3'- gaCUCGGCCuuUgGCucCGGCUGGaG- -5'
21713 3' -58.5 NC_004812.1 + 5423 0.69 0.642408
Target:  5'- -cGGGCCGGggGCCccccagaGGGGCgGAagaggaCUCg -3'
miRNA:   3'- gaCUCGGCCuuUGG-------CUCCGgCUg-----GAG- -5'
21713 3' -58.5 NC_004812.1 + 5540 0.67 0.75052
Target:  5'- -cGGGCCGGggGCCccccagaGGGGCgGAggaggaCUCg -3'
miRNA:   3'- gaCUCGGCCuuUGG-------CUCCGgCUg-----GAG- -5'
21713 3' -58.5 NC_004812.1 + 5619 0.69 0.643411
Target:  5'- -gGGGCCGGAGGCggcucgGGGGCCgGGCC-Cg -3'
miRNA:   3'- gaCUCGGCCUUUGg-----CUCCGG-CUGGaG- -5'
21713 3' -58.5 NC_004812.1 + 5878 0.71 0.553639
Target:  5'- -cGGGCCGGggGgCGcGGGCgCGGgCUCa -3'
miRNA:   3'- gaCUCGGCCuuUgGC-UCCG-GCUgGAG- -5'
21713 3' -58.5 NC_004812.1 + 6535 0.67 0.788331
Target:  5'- -gGGGCgGGggGCCGAgggGGCUG-CCg- -3'
miRNA:   3'- gaCUCGgCCuuUGGCU---CCGGCuGGag -5'
21713 3' -58.5 NC_004812.1 + 7673 0.71 0.543841
Target:  5'- -cGGGCCGGGAGCgGGGGUgGGCg-- -3'
miRNA:   3'- gaCUCGGCCUUUGgCUCCGgCUGgag -5'
21713 3' -58.5 NC_004812.1 + 7733 0.68 0.722724
Target:  5'- -cGcGCCGGGcgaGGCCGGGGgCGcccGCCUCc -3'
miRNA:   3'- gaCuCGGCCU---UUGGCUCCgGC---UGGAG- -5'
21713 3' -58.5 NC_004812.1 + 8017 0.7 0.573385
Target:  5'- -cGAccCCGGggGgCGcGGGCCGGCCUCc -3'
miRNA:   3'- gaCUc-GGCCuuUgGC-UCCGGCUGGAG- -5'
21713 3' -58.5 NC_004812.1 + 8182 0.72 0.495812
Target:  5'- aUGGGuCCGG--GCCGGGGuCCGGCCg- -3'
miRNA:   3'- gACUC-GGCCuuUGGCUCC-GGCUGGag -5'
21713 3' -58.5 NC_004812.1 + 8245 0.72 0.49487
Target:  5'- -cGGGCCGGGGguccGCCcccgggggcgccgGGGGCCGGCCg- -3'
miRNA:   3'- gaCUCGGCCUU----UGG-------------CUCCGGCUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.