Results 1 - 20 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21714 | 3' | -53.3 | NC_004812.1 | + | 134394 | 1.09 | 0.004278 |
Target: 5'- cGUACAUGCGGCGCAGCAUCAACCAGAu -3' miRNA: 3'- -CAUGUACGCCGCGUCGUAGUUGGUCU- -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 129381 | 0.91 | 0.065114 |
Target: 5'- -cGCGUGCGGCGCAGCucgcgCAGCCAGAg -3' miRNA: 3'- caUGUACGCCGCGUCGua---GUUGGUCU- -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 3873 | 0.91 | 0.065114 |
Target: 5'- -cGCGUGCGGCGCAGCucgcgCAGCCAGAg -3' miRNA: 3'- caUGUACGCCGCGUCGua---GUUGGUCU- -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 116156 | 0.8 | 0.32881 |
Target: 5'- -cACAgggccGCGGCGCGGCAUCGguauGCCGGGg -3' miRNA: 3'- caUGUa----CGCCGCGUCGUAGU----UGGUCU- -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 102414 | 0.77 | 0.46791 |
Target: 5'- -cGCggGCGGCGUcucaAGCGUCAuaACCAGAa -3' miRNA: 3'- caUGuaCGCCGCG----UCGUAGU--UGGUCU- -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 87183 | 0.76 | 0.497242 |
Target: 5'- -cGCGUGCGGC-CGGCGUCcuCCGGGc -3' miRNA: 3'- caUGUACGCCGcGUCGUAGuuGGUCU- -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 45058 | 0.76 | 0.507204 |
Target: 5'- -aACAUGCagcgccgcuGGUGCAGCGUCAcgaacGCCAGGu -3' miRNA: 3'- caUGUACG---------CCGCGUCGUAGU-----UGGUCU- -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 127794 | 0.74 | 0.589432 |
Target: 5'- -cACGaGCGGCGCGGCGUCGggguCCGGc -3' miRNA: 3'- caUGUaCGCCGCGUCGUAGUu---GGUCu -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 2286 | 0.74 | 0.589432 |
Target: 5'- -cACGaGCGGCGCGGCGUCGggguCCGGc -3' miRNA: 3'- caUGUaCGCCGCGUCGUAGUu---GGUCu -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 71966 | 0.74 | 0.631552 |
Target: 5'- -aGCGUGguggccgucUGGCGCGGCGUC-GCCAGGg -3' miRNA: 3'- caUGUAC---------GCCGCGUCGUAGuUGGUCU- -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 83250 | 0.73 | 0.642104 |
Target: 5'- -cACcgGgGGCGaGGCGUCGGCCGGGg -3' miRNA: 3'- caUGuaCgCCGCgUCGUAGUUGGUCU- -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 81401 | 0.73 | 0.673675 |
Target: 5'- -----gGCGGCGCAGUAUCGACUg-- -3' miRNA: 3'- cauguaCGCCGCGUCGUAGUUGGucu -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 27205 | 0.73 | 0.684138 |
Target: 5'- -cGCAgcgacGCGGCGuCAGCGUCcagcguGACCAGGa -3' miRNA: 3'- caUGUa----CGCCGC-GUCGUAG------UUGGUCU- -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 67738 | 0.72 | 0.704919 |
Target: 5'- -aGCGUGUuggGGCGCAGCGUCucGCCGu- -3' miRNA: 3'- caUGUACG---CCGCGUCGUAGu-UGGUcu -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 123921 | 0.72 | 0.745616 |
Target: 5'- aUGC-UGCGGCGgGGCGgagCGGCCGGc -3' miRNA: 3'- cAUGuACGCCGCgUCGUa--GUUGGUCu -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 154822 | 0.72 | 0.745616 |
Target: 5'- aUGC-UGCGGCGgGGCGgagCGGCCGGc -3' miRNA: 3'- cAUGuACGCCGCgUCGUa--GUUGGUCu -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 81250 | 0.71 | 0.755551 |
Target: 5'- cGUGCGUcGgGGCGCucgagcGCGUgGACCAGGc -3' miRNA: 3'- -CAUGUA-CgCCGCGu-----CGUAgUUGGUCU- -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 75982 | 0.71 | 0.755551 |
Target: 5'- cUGCAgGCGGCGCAGC-UCGACg--- -3' miRNA: 3'- cAUGUaCGCCGCGUCGuAGUUGgucu -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 96756 | 0.71 | 0.755551 |
Target: 5'- cUACGUGCGGCGCGcCGUC-GCgAGGa -3' miRNA: 3'- cAUGUACGCCGCGUcGUAGuUGgUCU- -5' |
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21714 | 3' | -53.3 | NC_004812.1 | + | 129148 | 0.71 | 0.76537 |
Target: 5'- -gGCGcGCGGCGCcgcccgcgucuGCGUCGGCCAGc -3' miRNA: 3'- caUGUaCGCCGCGu----------CGUAGUUGGUCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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