miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21714 3' -53.3 NC_004812.1 + 57 0.66 0.959612
Target:  5'- -gGCGcgGCGGCGCGGCGccacgcgcgcgcacUCGcgagggacggGCCGGGg -3'
miRNA:   3'- caUGUa-CGCCGCGUCGU--------------AGU----------UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 1486 0.69 0.855059
Target:  5'- -gGCGggcgGCGGCGgAGCGcCGGCCGGc -3'
miRNA:   3'- caUGUa---CGCCGCgUCGUaGUUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 2286 0.74 0.589432
Target:  5'- -cACGaGCGGCGCGGCGUCGggguCCGGc -3'
miRNA:   3'- caUGUaCGCCGCGUCGUAGUu---GGUCu -5'
21714 3' -53.3 NC_004812.1 + 2367 0.71 0.775064
Target:  5'- --cCcgGCGcGCGCGGCGUCGcgguccagcGCCAGGu -3'
miRNA:   3'- cauGuaCGC-CGCGUCGUAGU---------UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 2410 0.66 0.952946
Target:  5'- -cGCA-GCGGCGCGGC--CAGCCc-- -3'
miRNA:   3'- caUGUaCGCCGCGUCGuaGUUGGucu -5'
21714 3' -53.3 NC_004812.1 + 2514 0.66 0.964248
Target:  5'- --gUcgGCGGCGCGGcCGUCgAGCgCGGGc -3'
miRNA:   3'- cauGuaCGCCGCGUC-GUAG-UUG-GUCU- -5'
21714 3' -53.3 NC_004812.1 + 2808 0.67 0.92921
Target:  5'- -gACGUgGCGGCGCgcgacggcgGGCccGUCGGCCGGc -3'
miRNA:   3'- caUGUA-CGCCGCG---------UCG--UAGUUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 3197 0.7 0.838579
Target:  5'- -gGCG-GCGGCGCGGCG-CAGCgGGc -3'
miRNA:   3'- caUGUaCGCCGCGUCGUaGUUGgUCu -5'
21714 3' -53.3 NC_004812.1 + 3640 0.71 0.76537
Target:  5'- -gGCGcGCGGCGCcgcccgcgucuGCGUCGGCCAGc -3'
miRNA:   3'- caUGUaCGCCGCGu----------CGUAGUUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 3756 0.71 0.794033
Target:  5'- -aGCA-GCGGCGCGGCGgc-GCCGGc -3'
miRNA:   3'- caUGUaCGCCGCGUCGUaguUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 3873 0.91 0.065114
Target:  5'- -cGCGUGCGGCGCAGCucgcgCAGCCAGAg -3'
miRNA:   3'- caUGUACGCCGCGUCGua---GUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 3907 0.67 0.944203
Target:  5'- -gGCGcgGCGGCGCGGCggCGggGCCGc- -3'
miRNA:   3'- caUGUa-CGCCGCGUCGuaGU--UGGUcu -5'
21714 3' -53.3 NC_004812.1 + 4363 0.69 0.846923
Target:  5'- -gGCGacgGCGGCgGCGGCGUgcGCCAGGc -3'
miRNA:   3'- caUGUa--CGCCG-CGUCGUAguUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 7770 0.69 0.855059
Target:  5'- cGUGCGUGCGcgccGUGCGGCG-CGGCCGu- -3'
miRNA:   3'- -CAUGUACGC----CGCGUCGUaGUUGGUcu -5'
21714 3' -53.3 NC_004812.1 + 7924 0.7 0.838579
Target:  5'- -gGC-UGCGGCGCgcgccGGCG-CGGCCGGGg -3'
miRNA:   3'- caUGuACGCCGCG-----UCGUaGUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 10565 0.66 0.956951
Target:  5'- cUGCGUGcCGGCG-AGCGgu-GCCGGGg -3'
miRNA:   3'- cAUGUAC-GCCGCgUCGUaguUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 12152 0.66 0.956951
Target:  5'- -cGCugggGCGGCGCGcCGUCGGggccCCAGAa -3'
miRNA:   3'- caUGua--CGCCGCGUcGUAGUU----GGUCU- -5'
21714 3' -53.3 NC_004812.1 + 12905 0.67 0.944203
Target:  5'- gGUGCccccgggGCGGCGCGGCGagcgcUCGagcgcgacgaucGCCGGGg -3'
miRNA:   3'- -CAUGua-----CGCCGCGUCGU-----AGU------------UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 13397 0.67 0.939458
Target:  5'- --gUcgGgGGCGCGGCGggggugaCGGCCGGAg -3'
miRNA:   3'- cauGuaCgCCGCGUCGUa------GUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 14356 0.69 0.875939
Target:  5'- -cACGUGCuugccggccgcgcgGGCGCGGCggCGcACCAGGu -3'
miRNA:   3'- caUGUACG--------------CCGCGUCGuaGU-UGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.