miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21714 3' -53.3 NC_004812.1 + 134394 1.09 0.004278
Target:  5'- cGUACAUGCGGCGCAGCAUCAACCAGAu -3'
miRNA:   3'- -CAUGUACGCCGCGUCGUAGUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 129381 0.91 0.065114
Target:  5'- -cGCGUGCGGCGCAGCucgcgCAGCCAGAg -3'
miRNA:   3'- caUGUACGCCGCGUCGua---GUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 3873 0.91 0.065114
Target:  5'- -cGCGUGCGGCGCAGCucgcgCAGCCAGAg -3'
miRNA:   3'- caUGUACGCCGCGUCGua---GUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 116156 0.8 0.32881
Target:  5'- -cACAgggccGCGGCGCGGCAUCGguauGCCGGGg -3'
miRNA:   3'- caUGUa----CGCCGCGUCGUAGU----UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 102414 0.77 0.46791
Target:  5'- -cGCggGCGGCGUcucaAGCGUCAuaACCAGAa -3'
miRNA:   3'- caUGuaCGCCGCG----UCGUAGU--UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 87183 0.76 0.497242
Target:  5'- -cGCGUGCGGC-CGGCGUCcuCCGGGc -3'
miRNA:   3'- caUGUACGCCGcGUCGUAGuuGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 45058 0.76 0.507204
Target:  5'- -aACAUGCagcgccgcuGGUGCAGCGUCAcgaacGCCAGGu -3'
miRNA:   3'- caUGUACG---------CCGCGUCGUAGU-----UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 127794 0.74 0.589432
Target:  5'- -cACGaGCGGCGCGGCGUCGggguCCGGc -3'
miRNA:   3'- caUGUaCGCCGCGUCGUAGUu---GGUCu -5'
21714 3' -53.3 NC_004812.1 + 2286 0.74 0.589432
Target:  5'- -cACGaGCGGCGCGGCGUCGggguCCGGc -3'
miRNA:   3'- caUGUaCGCCGCGUCGUAGUu---GGUCu -5'
21714 3' -53.3 NC_004812.1 + 71966 0.74 0.631552
Target:  5'- -aGCGUGguggccgucUGGCGCGGCGUC-GCCAGGg -3'
miRNA:   3'- caUGUAC---------GCCGCGUCGUAGuUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 83250 0.73 0.642104
Target:  5'- -cACcgGgGGCGaGGCGUCGGCCGGGg -3'
miRNA:   3'- caUGuaCgCCGCgUCGUAGUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 81401 0.73 0.673675
Target:  5'- -----gGCGGCGCAGUAUCGACUg-- -3'
miRNA:   3'- cauguaCGCCGCGUCGUAGUUGGucu -5'
21714 3' -53.3 NC_004812.1 + 27205 0.73 0.684138
Target:  5'- -cGCAgcgacGCGGCGuCAGCGUCcagcguGACCAGGa -3'
miRNA:   3'- caUGUa----CGCCGC-GUCGUAG------UUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 67738 0.72 0.704919
Target:  5'- -aGCGUGUuggGGCGCAGCGUCucGCCGu- -3'
miRNA:   3'- caUGUACG---CCGCGUCGUAGu-UGGUcu -5'
21714 3' -53.3 NC_004812.1 + 123921 0.72 0.745616
Target:  5'- aUGC-UGCGGCGgGGCGgagCGGCCGGc -3'
miRNA:   3'- cAUGuACGCCGCgUCGUa--GUUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 154822 0.72 0.745616
Target:  5'- aUGC-UGCGGCGgGGCGgagCGGCCGGc -3'
miRNA:   3'- cAUGuACGCCGCgUCGUa--GUUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 81250 0.71 0.755551
Target:  5'- cGUGCGUcGgGGCGCucgagcGCGUgGACCAGGc -3'
miRNA:   3'- -CAUGUA-CgCCGCGu-----CGUAgUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 75982 0.71 0.755551
Target:  5'- cUGCAgGCGGCGCAGC-UCGACg--- -3'
miRNA:   3'- cAUGUaCGCCGCGUCGuAGUUGgucu -5'
21714 3' -53.3 NC_004812.1 + 96756 0.71 0.755551
Target:  5'- cUACGUGCGGCGCGcCGUC-GCgAGGa -3'
miRNA:   3'- cAUGUACGCCGCGUcGUAGuUGgUCU- -5'
21714 3' -53.3 NC_004812.1 + 129148 0.71 0.76537
Target:  5'- -gGCGcGCGGCGCcgcccgcgucuGCGUCGGCCAGc -3'
miRNA:   3'- caUGUaCGCCGCGu----------CGUAGUUGGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.