miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21714 3' -53.3 NC_004812.1 + 128706 0.7 0.838579
Target:  5'- -gGCG-GCGGCGCGGCG-CAGCgGGc -3'
miRNA:   3'- caUGUaCGCCGCGUCGUaGUUGgUCu -5'
21714 3' -53.3 NC_004812.1 + 129148 0.71 0.76537
Target:  5'- -gGCGcGCGGCGCcgcccgcgucuGCGUCGGCCAGc -3'
miRNA:   3'- caUGUaCGCCGCGu----------CGUAGUUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 59051 0.71 0.775064
Target:  5'- -cACGcGcCGGCGCAGCAcCGGCUGGAa -3'
miRNA:   3'- caUGUaC-GCCGCGUCGUaGUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 127875 0.71 0.775064
Target:  5'- --cCcgGCGcGCGCGGCGUCGcgguccagcGCCAGGu -3'
miRNA:   3'- cauGuaCGC-CGCGUCGUAGU---------UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 129264 0.71 0.794033
Target:  5'- -aGCA-GCGGCGCGGCGgc-GCCGGc -3'
miRNA:   3'- caUGUaCGCCGCGUCGUaguUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 52608 0.7 0.8213
Target:  5'- -aACAggGCGGCGUGcGCGUCGGCCuuGAu -3'
miRNA:   3'- caUGUa-CGCCGCGU-CGUAGUUGGu-CU- -5'
21714 3' -53.3 NC_004812.1 + 81107 0.7 0.830035
Target:  5'- gGUGCggGCGGCGUggugGGCcgUGGCCAGc -3'
miRNA:   3'- -CAUGuaCGCCGCG----UCGuaGUUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 7924 0.7 0.838579
Target:  5'- -gGC-UGCGGCGCgcgccGGCG-CGGCCGGGg -3'
miRNA:   3'- caUGuACGCCGCG-----UCGUaGUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 97464 0.7 0.838579
Target:  5'- --gUcgGaCGGCGCcagcGGCAUCGACCAGu -3'
miRNA:   3'- cauGuaC-GCCGCG----UCGUAGUUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 77591 0.71 0.76537
Target:  5'- gGUACcgGCGGuCGCgGGCGUCcccGGCCAGc -3'
miRNA:   3'- -CAUGuaCGCC-GCG-UCGUAG---UUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 96756 0.71 0.755551
Target:  5'- cUACGUGCGGCGCGcCGUC-GCgAGGa -3'
miRNA:   3'- cAUGUACGCCGCGUcGUAGuUGgUCU- -5'
21714 3' -53.3 NC_004812.1 + 75982 0.71 0.755551
Target:  5'- cUGCAgGCGGCGCAGC-UCGACg--- -3'
miRNA:   3'- cAUGUaCGCCGCGUCGuAGUUGgucu -5'
21714 3' -53.3 NC_004812.1 + 129381 0.91 0.065114
Target:  5'- -cGCGUGCGGCGCAGCucgcgCAGCCAGAg -3'
miRNA:   3'- caUGUACGCCGCGUCGua---GUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 116156 0.8 0.32881
Target:  5'- -cACAgggccGCGGCGCGGCAUCGguauGCCGGGg -3'
miRNA:   3'- caUGUa----CGCCGCGUCGUAGU----UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 102414 0.77 0.46791
Target:  5'- -cGCggGCGGCGUcucaAGCGUCAuaACCAGAa -3'
miRNA:   3'- caUGuaCGCCGCG----UCGUAGU--UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 127794 0.74 0.589432
Target:  5'- -cACGaGCGGCGCGGCGUCGggguCCGGc -3'
miRNA:   3'- caUGUaCGCCGCGUCGUAGUu---GGUCu -5'
21714 3' -53.3 NC_004812.1 + 83250 0.73 0.642104
Target:  5'- -cACcgGgGGCGaGGCGUCGGCCGGGg -3'
miRNA:   3'- caUGuaCgCCGCgUCGUAGUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 81401 0.73 0.673675
Target:  5'- -----gGCGGCGCAGUAUCGACUg-- -3'
miRNA:   3'- cauguaCGCCGCGUCGUAGUUGGucu -5'
21714 3' -53.3 NC_004812.1 + 27205 0.73 0.684138
Target:  5'- -cGCAgcgacGCGGCGuCAGCGUCcagcguGACCAGGa -3'
miRNA:   3'- caUGUa----CGCCGC-GUCGUAG------UUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 123921 0.72 0.745616
Target:  5'- aUGC-UGCGGCGgGGCGgagCGGCCGGc -3'
miRNA:   3'- cAUGuACGCCGCgUCGUa--GUUGGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.