miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21714 3' -53.3 NC_004812.1 + 46269 0.66 0.954577
Target:  5'- -----cGgGGCGCGGCAggauccgcgcggggCGGCCGGAg -3'
miRNA:   3'- cauguaCgCCGCGUCGUa-------------GUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 128733 0.66 0.956951
Target:  5'- -gGCGcGCGGCGgccgaaGGCG-CGGCCGGAg -3'
miRNA:   3'- caUGUaCGCCGCg-----UCGUaGUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 71068 0.66 0.960716
Target:  5'- -gGCGguucggGCGGCGCggGGCGUucggCGACCGGu -3'
miRNA:   3'- caUGUa-----CGCCGCG--UCGUA----GUUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 112832 0.66 0.956951
Target:  5'- -----gGCGGCGuCGGCGUUcugagaccgagaGGCCAGAc -3'
miRNA:   3'- cauguaCGCCGC-GUCGUAG------------UUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 24856 0.66 0.956951
Target:  5'- -cGCggGCGGCGCGGCu---GCgGGGg -3'
miRNA:   3'- caUGuaCGCCGCGUCGuaguUGgUCU- -5'
21714 3' -53.3 NC_004812.1 + 64155 0.66 0.956951
Target:  5'- -gACG-GCGGCGCGGCGggcUCcGCgCGGGa -3'
miRNA:   3'- caUGUaCGCCGCGUCGU---AGuUG-GUCU- -5'
21714 3' -53.3 NC_004812.1 + 88303 0.66 0.956951
Target:  5'- uGUGCAaccUGGC-CAGCGUCAACCuGGc -3'
miRNA:   3'- -CAUGUac-GCCGcGUCGUAGUUGGuCU- -5'
21714 3' -53.3 NC_004812.1 + 114161 0.66 0.952946
Target:  5'- aUGgAUGCGGC-CGGCcuUCcGCCGGAg -3'
miRNA:   3'- cAUgUACGCCGcGUCGu-AGuUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 17066 0.66 0.952946
Target:  5'- cGUACuuUGC-GCGCuGCcgCGACCAGu -3'
miRNA:   3'- -CAUGu-ACGcCGCGuCGuaGUUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 95600 0.66 0.948698
Target:  5'- -cGCGggcGCGGCaGCAGCAaCGgcACCGGGc -3'
miRNA:   3'- caUGUa--CGCCG-CGUCGUaGU--UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 60468 0.66 0.967552
Target:  5'- -aGCGgaagGCGGCGCGGUcgC--CCGGGu -3'
miRNA:   3'- caUGUa---CGCCGCGUCGuaGuuGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 39838 0.66 0.956951
Target:  5'- -cGCGUGCccguaGGCGguGCGgggGGCCGGGg -3'
miRNA:   3'- caUGUACG-----CCGCguCGUag-UUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 156467 0.66 0.959612
Target:  5'- -gGCGcgGCGGCGCGGCGccacgcgcgcgcacUCGcgagggacggGCCGGGg -3'
miRNA:   3'- caUGUa-CGCCGCGUCGU--------------AGU----------UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 127918 0.66 0.952946
Target:  5'- -cGCA-GCGGCGCGGC--CAGCCc-- -3'
miRNA:   3'- caUGUaCGCCGCGUCGuaGUUGGucu -5'
21714 3' -53.3 NC_004812.1 + 37454 0.66 0.956951
Target:  5'- gGUGCGUgguccaguccGCGGgGCGGUA-CGGCCGGu -3'
miRNA:   3'- -CAUGUA----------CGCCgCGUCGUaGUUGGUCu -5'
21714 3' -53.3 NC_004812.1 + 135887 0.66 0.956951
Target:  5'- gGUACAgacgggggcgGgGGCGCGGCucgCAgagggACCGGAa -3'
miRNA:   3'- -CAUGUa---------CgCCGCGUCGua-GU-----UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 57 0.66 0.959612
Target:  5'- -gGCGcgGCGGCGCGGCGccacgcgcgcgcacUCGcgagggacggGCCGGGg -3'
miRNA:   3'- caUGUa-CGCCGCGUCGU--------------AGU----------UGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 55013 0.66 0.952946
Target:  5'- -----gGCGGCGCAGC-UCGACUu-- -3'
miRNA:   3'- cauguaCGCCGCGUCGuAGUUGGucu -5'
21714 3' -53.3 NC_004812.1 + 110372 0.66 0.952946
Target:  5'- -aACAgGCGGUGCuGC-UgGACCGGGa -3'
miRNA:   3'- caUGUaCGCCGCGuCGuAgUUGGUCU- -5'
21714 3' -53.3 NC_004812.1 + 137383 0.66 0.956951
Target:  5'- cUACAUccaCGGCGagGGCAUCAuacACCGGGa -3'
miRNA:   3'- cAUGUAc--GCCGCg-UCGUAGU---UGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.