miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21714 5' -62.8 NC_004812.1 + 75422 0.66 0.619441
Target:  5'- -gCCggUCCGGaccaGCUCCGCCGcggcggccgggucgCCGCGg -3'
miRNA:   3'- gaGG--AGGCCg---CGAGGCGGCua------------GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 131304 0.66 0.599042
Target:  5'- uUCCUCCucgacccCGCUCCGUCGGUCuCGgGa -3'
miRNA:   3'- gAGGAGGcc-----GCGAGGCGGCUAG-GCgU- -5'
21714 5' -62.8 NC_004812.1 + 96534 0.66 0.628198
Target:  5'- gCUCgC-CCGcguGCGCUCCGCCcugCCGCu -3'
miRNA:   3'- -GAG-GaGGC---CGCGAGGCGGcuaGGCGu -5'
21714 5' -62.8 NC_004812.1 + 74782 0.66 0.628198
Target:  5'- -gCCUCCGGCGaCUuccacgcgcccCCGCgGGcCCGCc -3'
miRNA:   3'- gaGGAGGCCGC-GA-----------GGCGgCUaGGCGu -5'
21714 5' -62.8 NC_004812.1 + 151679 0.66 0.608747
Target:  5'- -cCCUCCaGCGCcgCCucCCGggCCGCAg -3'
miRNA:   3'- gaGGAGGcCGCGa-GGc-GGCuaGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 130576 0.66 0.628198
Target:  5'- -gCCcCCGGCcccgGCcCCGCCGucgccGUCCGCGu -3'
miRNA:   3'- gaGGaGGCCG----CGaGGCGGC-----UAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 111414 0.66 0.608747
Target:  5'- uCUCgCUgCCGGcCGCgCCGCCGGgcUCCGg- -3'
miRNA:   3'- -GAG-GA-GGCC-GCGaGGCGGCU--AGGCgu -5'
21714 5' -62.8 NC_004812.1 + 18572 0.66 0.628198
Target:  5'- gCUCCgCCGcCGCcgCCGCCGcacCCGCGc -3'
miRNA:   3'- -GAGGaGGCcGCGa-GGCGGCua-GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 20646 0.66 0.608747
Target:  5'- cCUCCUCCGaGagcagGCUcCCGUCGGUCaCGUu -3'
miRNA:   3'- -GAGGAGGC-Cg----CGA-GGCGGCUAG-GCGu -5'
21714 5' -62.8 NC_004812.1 + 76338 0.66 0.608747
Target:  5'- uCUCCcgCCGcacCGCcaCCGCCaGGUCCGCGg -3'
miRNA:   3'- -GAGGa-GGCc--GCGa-GGCGG-CUAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 106510 0.66 0.628198
Target:  5'- gUCCg-CGGCGCggggCGCCGGcggCCGCGg -3'
miRNA:   3'- gAGGagGCCGCGag--GCGGCUa--GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 136526 0.66 0.608747
Target:  5'- gCUCCUCCgaGGCG-UCCGCUGGcuggCgCGCGc -3'
miRNA:   3'- -GAGGAGG--CCGCgAGGCGGCUa---G-GCGU- -5'
21714 5' -62.8 NC_004812.1 + 83362 0.66 0.618468
Target:  5'- gUCCgcgCCGGCcccaggGCggCGgCGGUCCGCAg -3'
miRNA:   3'- gAGGa--GGCCG------CGagGCgGCUAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 694 0.66 0.618468
Target:  5'- gUCCccgggUCCGGaGCUCCGUCGGcgUCgGCGc -3'
miRNA:   3'- gAGG-----AGGCCgCGAGGCGGCU--AGgCGU- -5'
21714 5' -62.8 NC_004812.1 + 135516 0.66 0.618468
Target:  5'- gCUCUgUCGGCGuCUUCGCCGccucggccgCCGCGg -3'
miRNA:   3'- -GAGGaGGCCGC-GAGGCGGCua-------GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 4582 0.66 0.608747
Target:  5'- -aCCcCCGG-GC-CCGCCGAcCCGCc -3'
miRNA:   3'- gaGGaGGCCgCGaGGCGGCUaGGCGu -5'
21714 5' -62.8 NC_004812.1 + 74880 0.66 0.608747
Target:  5'- -gCCgUCCGGCGCcgcgUCuCGCCGAg-CGCGu -3'
miRNA:   3'- gaGG-AGGCCGCG----AG-GCGGCUagGCGU- -5'
21714 5' -62.8 NC_004812.1 + 1194 0.66 0.627225
Target:  5'- --aCUCCGGUauauguaGCUCgGCCGGgggcggcgCCGCGg -3'
miRNA:   3'- gagGAGGCCG-------CGAGgCGGCUa-------GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 72527 0.66 0.599042
Target:  5'- gUCCgggCCGGCGC-CCGCggcgaaCGGgaaCCGCGc -3'
miRNA:   3'- gAGGa--GGCCGCGaGGCG------GCUa--GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 48354 0.66 0.628198
Target:  5'- -gCCgCCGaGgGCUCCGCCGcggacgCCGCc -3'
miRNA:   3'- gaGGaGGC-CgCGAGGCGGCua----GGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.