miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21714 5' -62.8 NC_004812.1 + 134428 1.07 0.001018
Target:  5'- cCUCCUCCGGCGCUCCGCCGAUCCGCAc -3'
miRNA:   3'- -GAGGAGGCCGCGAGGCGGCUAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 29613 0.78 0.133595
Target:  5'- -gCCggCCGGCGCUCCGCCGccgcCCGCc -3'
miRNA:   3'- gaGGa-GGCCGCGAGGCGGCua--GGCGu -5'
21714 5' -62.8 NC_004812.1 + 155121 0.78 0.133595
Target:  5'- -gCCggCCGGCGCUCCGCCGccgcCCGCc -3'
miRNA:   3'- gaGGa-GGCCGCGAGGCGGCua--GGCGu -5'
21714 5' -62.8 NC_004812.1 + 152902 0.76 0.174566
Target:  5'- gCUCCgCCGGCGCcgccgCCGCCGAcCUGCu -3'
miRNA:   3'- -GAGGaGGCCGCGa----GGCGGCUaGGCGu -5'
21714 5' -62.8 NC_004812.1 + 27394 0.76 0.174566
Target:  5'- gCUCCgCCGGCGCcgccgCCGCCGAcCUGCu -3'
miRNA:   3'- -GAGGaGGCCGCGa----GGCGGCUaGGCGu -5'
21714 5' -62.8 NC_004812.1 + 140399 0.75 0.183127
Target:  5'- -gCCUCCGGCGCgCgGCCcgGGUCCGCc -3'
miRNA:   3'- gaGGAGGCCGCGaGgCGG--CUAGGCGu -5'
21714 5' -62.8 NC_004812.1 + 50439 0.75 0.201365
Target:  5'- aUCCUgCGGCGCgaggCCGCCGAggCCGa- -3'
miRNA:   3'- gAGGAgGCCGCGa---GGCGGCUa-GGCgu -5'
21714 5' -62.8 NC_004812.1 + 153016 0.74 0.23708
Target:  5'- gCUCCUcgCCGGCGCgcccgcCCGCCGccgCCGCc -3'
miRNA:   3'- -GAGGA--GGCCGCGa-----GGCGGCua-GGCGu -5'
21714 5' -62.8 NC_004812.1 + 27508 0.74 0.23708
Target:  5'- gCUCCUcgCCGGCGCgcccgcCCGCCGccgCCGCc -3'
miRNA:   3'- -GAGGA--GGCCGCGa-----GGCGGCua-GGCGu -5'
21714 5' -62.8 NC_004812.1 + 119872 0.74 0.242595
Target:  5'- -gCCUcCCGaGCGCgCCGCCGGcCCGCAg -3'
miRNA:   3'- gaGGA-GGC-CGCGaGGCGGCUaGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 150773 0.74 0.242595
Target:  5'- -gCCUcCCGaGCGCgCCGCCGGcCCGCAg -3'
miRNA:   3'- gaGGA-GGC-CGCGaGGCGGCUaGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 4021 0.73 0.248216
Target:  5'- cCUCCUCCGcguccucucGCGCcgcCCGCCGcUCCGCc -3'
miRNA:   3'- -GAGGAGGC---------CGCGa--GGCGGCuAGGCGu -5'
21714 5' -62.8 NC_004812.1 + 62996 0.73 0.253367
Target:  5'- uUCUUCCGggcggaaGCGCgggCCGCCGcGUCCGCGa -3'
miRNA:   3'- gAGGAGGC-------CGCGa--GGCGGC-UAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 116389 0.72 0.297116
Target:  5'- -gCCggCCaGGCGCgggcggUCGCCGAUCCGCu -3'
miRNA:   3'- gaGGa-GG-CCGCGa-----GGCGGCUAGGCGu -5'
21714 5' -62.8 NC_004812.1 + 11968 0.72 0.301733
Target:  5'- cCUCCUCgugucccgcgggggCGGgGUUCCGCCGGcgggcuccggucUCCGCGg -3'
miRNA:   3'- -GAGGAG--------------GCCgCGAGGCGGCU------------AGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 31177 0.72 0.303729
Target:  5'- uCUCC-CgCGcGCGCUCCGCCGccGUCCGg- -3'
miRNA:   3'- -GAGGaG-GC-CGCGAGGCGGC--UAGGCgu -5'
21714 5' -62.8 NC_004812.1 + 276 0.72 0.303729
Target:  5'- uCUCC-CgCGcGCGCUCCGCCGccGUCCGg- -3'
miRNA:   3'- -GAGGaG-GC-CGCGAGGCGGC--UAGGCgu -5'
21714 5' -62.8 NC_004812.1 + 38287 0.72 0.310454
Target:  5'- aCUgCUCCGGCGUcaUCUGCCccUCCGCc -3'
miRNA:   3'- -GAgGAGGCCGCG--AGGCGGcuAGGCGu -5'
21714 5' -62.8 NC_004812.1 + 1317 0.72 0.310454
Target:  5'- gUCCgCgGGCGgUCCGCgggCGGUCCGCGg -3'
miRNA:   3'- gAGGaGgCCGCgAGGCG---GCUAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 134169 0.72 0.310454
Target:  5'- cCUCCUCgGaGUGCUCCGgagaCGAgcUCCGCGa -3'
miRNA:   3'- -GAGGAGgC-CGCGAGGCg---GCU--AGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.