miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21714 5' -62.8 NC_004812.1 + 276 0.72 0.303729
Target:  5'- uCUCC-CgCGcGCGCUCCGCCGccGUCCGg- -3'
miRNA:   3'- -GAGGaG-GC-CGCGAGGCGGC--UAGGCgu -5'
21714 5' -62.8 NC_004812.1 + 423 0.66 0.637932
Target:  5'- uUCCgcgCgCGGCGCUCuCGCgCGcgcccgCCGCGa -3'
miRNA:   3'- gAGGa--G-GCCGCGAG-GCG-GCua----GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 554 0.68 0.522676
Target:  5'- cCUCCcgccCCGGCGCgcgCgGCCGcguggagCCGCGg -3'
miRNA:   3'- -GAGGa---GGCCGCGa--GgCGGCua-----GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 694 0.66 0.618468
Target:  5'- gUCCccgggUCCGGaGCUCCGUCGGcgUCgGCGc -3'
miRNA:   3'- gAGG-----AGGCCgCGAGGCGGCU--AGgCGU- -5'
21714 5' -62.8 NC_004812.1 + 1096 0.68 0.501373
Target:  5'- uCUCCUCCugcccggcggcccgGGuCGCUUCGCCGGggcccaUCGCAu -3'
miRNA:   3'- -GAGGAGG--------------CC-GCGAGGCGGCUa-----GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 1194 0.66 0.627225
Target:  5'- --aCUCCGGUauauguaGCUCgGCCGGgggcggcgCCGCGg -3'
miRNA:   3'- gagGAGGCCG-------CGAGgCGGCUa-------GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 1235 0.72 0.317292
Target:  5'- gCUCCUCCccgcccgggcGGCGCcgcggCCGCCcguuGGUCCGCc -3'
miRNA:   3'- -GAGGAGG----------CCGCGa----GGCGG----CUAGGCGu -5'
21714 5' -62.8 NC_004812.1 + 1317 0.72 0.310454
Target:  5'- gUCCgCgGGCGgUCCGCgggCGGUCCGCGg -3'
miRNA:   3'- gAGGaGgCCGCgAGGCG---GCUAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 1606 0.68 0.476866
Target:  5'- -gCCUCCGGgCGCcCCGCgCGAgggaCCGUg -3'
miRNA:   3'- gaGGAGGCC-GCGaGGCG-GCUa---GGCGu -5'
21714 5' -62.8 NC_004812.1 + 1774 0.72 0.317292
Target:  5'- gUCCcucggggggCCGGcCGCUCCGCCccgCCGCAg -3'
miRNA:   3'- gAGGa--------GGCC-GCGAGGCGGcuaGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 1929 0.69 0.441696
Target:  5'- gCUCCggCCggGGCGCUCCGCCcGUCgGgGg -3'
miRNA:   3'- -GAGGa-GG--CCGCGAGGCGGcUAGgCgU- -5'
21714 5' -62.8 NC_004812.1 + 2096 0.67 0.589359
Target:  5'- -gCCUCCaGCGgacCUCCGCCGc-CCGCc -3'
miRNA:   3'- gaGGAGGcCGC---GAGGCGGCuaGGCGu -5'
21714 5' -62.8 NC_004812.1 + 2585 0.69 0.449483
Target:  5'- -gCCUCCGaCGCcgccgCCGCCGAcggcaccggacucUCCGCGc -3'
miRNA:   3'- gaGGAGGCcGCGa----GGCGGCU-------------AGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 3236 0.68 0.504131
Target:  5'- uUCCacCCGGCGC-CCGCCaGGggcgcCCGCGc -3'
miRNA:   3'- gAGGa-GGCCGCGaGGCGG-CUa----GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 3428 0.68 0.522676
Target:  5'- -cCCUCCGGCGCcgCCGCgccccccgUGGUCCcCGu -3'
miRNA:   3'- gaGGAGGCCGCGa-GGCG--------GCUAGGcGU- -5'
21714 5' -62.8 NC_004812.1 + 4021 0.73 0.248216
Target:  5'- cCUCCUCCGcguccucucGCGCcgcCCGCCGcUCCGCc -3'
miRNA:   3'- -GAGGAGGC---------CGCGa--GGCGGCuAGGCGu -5'
21714 5' -62.8 NC_004812.1 + 4078 0.69 0.450353
Target:  5'- cCUCCgCCGGcCGCgCCGCC--UCCGCc -3'
miRNA:   3'- -GAGGaGGCC-GCGaGGCGGcuAGGCGu -5'
21714 5' -62.8 NC_004812.1 + 4582 0.66 0.608747
Target:  5'- -aCCcCCGG-GC-CCGCCGAcCCGCc -3'
miRNA:   3'- gaGGaGGCCgCGaGGCGGCUaGGCGu -5'
21714 5' -62.8 NC_004812.1 + 5067 0.66 0.628198
Target:  5'- -gCCcCCGGCcccgGCcCCGCCGucgccGUCCGCGu -3'
miRNA:   3'- gaGGaGGCCG----CGaGGCGGC-----UAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 5328 0.67 0.579704
Target:  5'- gUCCgCCGGgGCgCCGCCcggGGUCgGCGg -3'
miRNA:   3'- gAGGaGGCCgCGaGGCGG---CUAGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.