miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21714 5' -62.8 NC_004812.1 + 140621 0.7 0.391827
Target:  5'- cCUCCUgcaCCGGUGCUguagacgcgCCGCCGcgCgGCGg -3'
miRNA:   3'- -GAGGA---GGCCGCGA---------GGCGGCuaGgCGU- -5'
21714 5' -62.8 NC_004812.1 + 1235 0.72 0.317292
Target:  5'- gCUCCUCCccgcccgggcGGCGCcgcggCCGCCcguuGGUCCGCc -3'
miRNA:   3'- -GAGGAGG----------CCGCGa----GGCGG----CUAGGCGu -5'
21714 5' -62.8 NC_004812.1 + 1774 0.72 0.317292
Target:  5'- gUCCcucggggggCCGGcCGCUCCGCCccgCCGCAg -3'
miRNA:   3'- gAGGa--------GGCC-GCGAGGCGGcuaGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 96054 0.71 0.324243
Target:  5'- gCUCCgCCGGCcCUCCcucUCGAUCCGCGc -3'
miRNA:   3'- -GAGGaGGCCGcGAGGc--GGCUAGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 14644 0.71 0.324243
Target:  5'- cCUCCagCCGGUGCUCCGCCaGcUCC-CGg -3'
miRNA:   3'- -GAGGa-GGCCGCGAGGCGG-CuAGGcGU- -5'
21714 5' -62.8 NC_004812.1 + 8052 0.71 0.360683
Target:  5'- -cCCcCCGGCGC-CCgGCCGGcCCGCGa -3'
miRNA:   3'- gaGGaGGCCGCGaGG-CGGCUaGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 48147 0.71 0.368305
Target:  5'- gUCCUCgaGGCGCggCGCCGGgcggcggCCGCGg -3'
miRNA:   3'- gAGGAGg-CCGCGagGCGGCUa------GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 18296 0.7 0.376037
Target:  5'- cCUCCgcgCCGGCGCcacCCuCCGAgcccgCCGCGa -3'
miRNA:   3'- -GAGGa--GGCCGCGa--GGcGGCUa----GGCGU- -5'
21714 5' -62.8 NC_004812.1 + 133217 0.7 0.383878
Target:  5'- -cCCgucgCCGGaCGCUcgcCCGCCGGgaUCCGCGc -3'
miRNA:   3'- gaGGa---GGCC-GCGA---GGCGGCU--AGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 57682 0.72 0.317292
Target:  5'- uCUCUUCCgGGCGCcggCCGCgUGcgCCGCAa -3'
miRNA:   3'- -GAGGAGG-CCGCGa--GGCG-GCuaGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 134169 0.72 0.310454
Target:  5'- cCUCCUCgGaGUGCUCCGgagaCGAgcUCCGCGa -3'
miRNA:   3'- -GAGGAGgC-CGCGAGGCg---GCU--AGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 38287 0.72 0.310454
Target:  5'- aCUgCUCCGGCGUcaUCUGCCccUCCGCc -3'
miRNA:   3'- -GAgGAGGCCGCG--AGGCGGcuAGGCGu -5'
21714 5' -62.8 NC_004812.1 + 155121 0.78 0.133595
Target:  5'- -gCCggCCGGCGCUCCGCCGccgcCCGCc -3'
miRNA:   3'- gaGGa-GGCCGCGAGGCGGCua--GGCGu -5'
21714 5' -62.8 NC_004812.1 + 152902 0.76 0.174566
Target:  5'- gCUCCgCCGGCGCcgccgCCGCCGAcCUGCu -3'
miRNA:   3'- -GAGGaGGCCGCGa----GGCGGCUaGGCGu -5'
21714 5' -62.8 NC_004812.1 + 50439 0.75 0.201365
Target:  5'- aUCCUgCGGCGCgaggCCGCCGAggCCGa- -3'
miRNA:   3'- gAGGAgGCCGCGa---GGCGGCUa-GGCgu -5'
21714 5' -62.8 NC_004812.1 + 153016 0.74 0.23708
Target:  5'- gCUCCUcgCCGGCGCgcccgcCCGCCGccgCCGCc -3'
miRNA:   3'- -GAGGA--GGCCGCGa-----GGCGGCua-GGCGu -5'
21714 5' -62.8 NC_004812.1 + 119872 0.74 0.242595
Target:  5'- -gCCUcCCGaGCGCgCCGCCGGcCCGCAg -3'
miRNA:   3'- gaGGA-GGC-CGCGaGGCGGCUaGGCGU- -5'
21714 5' -62.8 NC_004812.1 + 4021 0.73 0.248216
Target:  5'- cCUCCUCCGcguccucucGCGCcgcCCGCCGcUCCGCc -3'
miRNA:   3'- -GAGGAGGC---------CGCGa--GGCGGCuAGGCGu -5'
21714 5' -62.8 NC_004812.1 + 276 0.72 0.303729
Target:  5'- uCUCC-CgCGcGCGCUCCGCCGccGUCCGg- -3'
miRNA:   3'- -GAGGaG-GC-CGCGAGGCGGC--UAGGCgu -5'
21714 5' -62.8 NC_004812.1 + 1317 0.72 0.310454
Target:  5'- gUCCgCgGGCGgUCCGCgggCGGUCCGCGg -3'
miRNA:   3'- gAGGaGgCCGCgAGGCG---GCUAGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.