miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21715 5' -44.3 NC_004812.1 + 156373 0.67 0.999994
Target:  5'- gGGGGAGGAGAgCgGGGCcGCGGGGGc -3'
miRNA:   3'- -CCUUUCCUUUgGgUCUGcUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 156328 0.66 0.999999
Target:  5'- cGGGAGGggGCCgAGGgGGgGGGGGGg -3'
miRNA:   3'- cCUUUCCuuUGGgUCUgCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 156274 0.7 0.999501
Target:  5'- cGGGAGGGGGACgggaGGGgGACGAGGAGa -3'
miRNA:   3'- -CCUUUCCUUUGgg--UCUgCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 156200 0.69 0.999891
Target:  5'- gGGGGAGGggGCCgCuggggagagGGACGGgGGGGAGa -3'
miRNA:   3'- -CCUUUCCuuUGG-G---------UCUGCUgUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 156075 0.69 0.999856
Target:  5'- gGGAGgcGGGAgGGCCCGGGCGcGCGGGc-- -3'
miRNA:   3'- -CCUU--UCCU-UUGGGUCUGC-UGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 156017 0.67 0.999997
Target:  5'- gGGAGGGGAcGCCCGGGgcCGGgGGc--- -3'
miRNA:   3'- -CCUUUCCUuUGGGUCU--GCUgUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 155862 0.67 0.999987
Target:  5'- cGGGAGGcGAGGCgCGcGCGGCGGGGGAg -3'
miRNA:   3'- -CCUUUC-CUUUGgGUcUGCUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 155569 0.66 0.999999
Target:  5'- gGGGGAGGGGcgcGCgCGGGCGGCc----- -3'
miRNA:   3'- -CCUUUCCUU---UGgGUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 155525 0.68 0.999966
Target:  5'- cGGGcagGAGGAGACCgCGGcCgGGCAGGAGGa -3'
miRNA:   3'- -CCU---UUCCUUUGG-GUCuG-CUGUUUUUU- -5'
21715 5' -44.3 NC_004812.1 + 155389 0.67 0.999997
Target:  5'- cGGGGAGG-AGCCCccGCGGCGc---- -3'
miRNA:   3'- -CCUUUCCuUUGGGucUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 155030 0.77 0.961215
Target:  5'- gGGAGccgugcggGGGGGACCCGGGCGGCu----- -3'
miRNA:   3'- -CCUU--------UCCUUUGGGUCUGCUGuuuuuu -5'
21715 5' -44.3 NC_004812.1 + 153319 0.67 0.999997
Target:  5'- cGGGu-GGAcgcgcggugGGCCCGGGCGGCGu---- -3'
miRNA:   3'- -CCUuuCCU---------UUGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 153211 0.66 0.999999
Target:  5'- cGggGGGAGGC--GGGCGGCGAGu-- -3'
miRNA:   3'- cCuuUCCUUUGggUCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 152843 0.68 0.999982
Target:  5'- -cGGGGGGGACUUGGGCGGCGGGc-- -3'
miRNA:   3'- ccUUUCCUUUGGGUCUGCUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 152514 0.71 0.999111
Target:  5'- cGGGGAGGAcGGCCCcgccggggccgcgggGGAgGACGAGGAc -3'
miRNA:   3'- -CCUUUCCU-UUGGG---------------UCUgCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 152216 0.68 0.999954
Target:  5'- cGgcGGGAccACCCGGGCGACGc---- -3'
miRNA:   3'- cCuuUCCUu-UGGGUCUGCUGUuuuuu -5'
21715 5' -44.3 NC_004812.1 + 151443 0.67 0.999987
Target:  5'- cGGAgucgGAGGAcucgGGCCCGGACcGCGGGc-- -3'
miRNA:   3'- -CCU----UUCCU----UUGGGUCUGcUGUUUuuu -5'
21715 5' -44.3 NC_004812.1 + 151056 0.69 0.999813
Target:  5'- cGGAccccGAGG-AGCCCGacGACGACGAc--- -3'
miRNA:   3'- -CCU----UUCCuUUGGGU--CUGCUGUUuuuu -5'
21715 5' -44.3 NC_004812.1 + 150416 0.68 0.999982
Target:  5'- gGGAAGGGAAggggguugauGCUaaugagAGACGACAGGGGc -3'
miRNA:   3'- -CCUUUCCUU----------UGGg-----UCUGCUGUUUUUu -5'
21715 5' -44.3 NC_004812.1 + 149764 0.75 0.982031
Target:  5'- gGGGAAGGAGGCCCGGcgggugugGCGAUgcuaauGAAAAAc -3'
miRNA:   3'- -CCUUUCCUUUGGGUC--------UGCUG------UUUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.