miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21716 5' -53.2 NC_004812.1 + 130847 0.66 0.965977
Target:  5'- cGCCGcccggggucggcGGGGGCGCGGCGGcgucgauGACCCAn- -3'
miRNA:   3'- cUGGC------------UUUUUGUGCCGCC-------CUGGGUuc -5'
21716 5' -53.2 NC_004812.1 + 60816 0.66 0.969416
Target:  5'- aGGCCGAGAAcccgaacuGC-CGGCGGGcgcGCUCGcAGa -3'
miRNA:   3'- -CUGGCUUUU--------UGuGCCGCCC---UGGGU-UC- -5'
21716 5' -53.2 NC_004812.1 + 117664 0.66 0.969416
Target:  5'- cGGCCGG---GCGcCGGgGGGugCCGGc -3'
miRNA:   3'- -CUGGCUuuuUGU-GCCgCCCugGGUUc -5'
21716 5' -53.2 NC_004812.1 + 144619 0.66 0.969416
Target:  5'- aGACCGGAGcccGC-CGGCGGaACCCc-- -3'
miRNA:   3'- -CUGGCUUUu--UGuGCCGCCcUGGGuuc -5'
21716 5' -53.2 NC_004812.1 + 149013 0.66 0.9663
Target:  5'- gGGCCGG---GCGCGGCGGcGCCg--- -3'
miRNA:   3'- -CUGGCUuuuUGUGCCGCCcUGGguuc -5'
21716 5' -53.2 NC_004812.1 + 19899 0.66 0.9663
Target:  5'- --gCGggGGACGCGGCGG--CCCGc- -3'
miRNA:   3'- cugGCuuUUUGUGCCGCCcuGGGUuc -5'
21716 5' -53.2 NC_004812.1 + 37062 0.66 0.97847
Target:  5'- -gUCGggGGccuGgGCGGCGGGgguugggucgcggagGCCCGGGg -3'
miRNA:   3'- cuGGCuuUU---UgUGCCGCCC---------------UGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 102946 0.66 0.9663
Target:  5'- --gCGggGGugGCGGgGGGGCgUCGGGg -3'
miRNA:   3'- cugGCuuUUugUGCCgCCCUG-GGUUC- -5'
21716 5' -53.2 NC_004812.1 + 78525 0.66 0.965323
Target:  5'- cGGCCGAGcAGCuCGGUcaggcugccgcaagGGGGCuCCGGGg -3'
miRNA:   3'- -CUGGCUUuUUGuGCCG--------------CCCUG-GGUUC- -5'
21716 5' -53.2 NC_004812.1 + 139723 0.66 0.969114
Target:  5'- cGGCCGAGAAuccuccacccGCgACGGgccacgccgguccCGGGGCCCGc- -3'
miRNA:   3'- -CUGGCUUUU----------UG-UGCC-------------GCCCUGGGUuc -5'
21716 5' -53.2 NC_004812.1 + 89628 0.66 0.9663
Target:  5'- uGACCGAGAAcCuCGGgGGGcuCUCGGGg -3'
miRNA:   3'- -CUGGCUUUUuGuGCCgCCCu-GGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 40188 0.66 0.9663
Target:  5'- aGGCCGuccc-CAgGGCGcGGGCCCGc- -3'
miRNA:   3'- -CUGGCuuuuuGUgCCGC-CCUGGGUuc -5'
21716 5' -53.2 NC_004812.1 + 139630 0.66 0.9663
Target:  5'- -cCCGGAGcGgGgGGCGGGGCCgaGAGa -3'
miRNA:   3'- cuGGCUUUuUgUgCCGCCCUGGg-UUC- -5'
21716 5' -53.2 NC_004812.1 + 117105 0.66 0.9663
Target:  5'- uACCGGGAGGCGCGGCcuccGGGcggcGCgCCAc- -3'
miRNA:   3'- cUGGCUUUUUGUGCCG----CCC----UG-GGUuc -5'
21716 5' -53.2 NC_004812.1 + 38526 0.66 0.9663
Target:  5'- aGCCGGAGcACGCGGUGGuccuuccCCCAGa -3'
miRNA:   3'- cUGGCUUUuUGUGCCGCCcu-----GGGUUc -5'
21716 5' -53.2 NC_004812.1 + 72741 0.66 0.969416
Target:  5'- --aCGAAGcGCACGuccgGGGGCCCGGGg -3'
miRNA:   3'- cugGCUUUuUGUGCcg--CCCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 115527 0.66 0.969416
Target:  5'- cGGgCGggGAGUACGGagggGGGGCCuCGAGa -3'
miRNA:   3'- -CUgGCuuUUUGUGCCg---CCCUGG-GUUC- -5'
21716 5' -53.2 NC_004812.1 + 23235 0.66 0.9663
Target:  5'- -cCCGggGggUGCuGaGCGGGACCUAc- -3'
miRNA:   3'- cuGGCuuUuuGUG-C-CGCCCUGGGUuc -5'
21716 5' -53.2 NC_004812.1 + 104950 0.66 0.969416
Target:  5'- gGAUCGggGu-CGCGGCGGGGa--GAGg -3'
miRNA:   3'- -CUGGCuuUuuGUGCCGCCCUgggUUC- -5'
21716 5' -53.2 NC_004812.1 + 5068 0.66 0.969416
Target:  5'- cGGgCGGGAGACuCGG-GGGGCCgGGGu -3'
miRNA:   3'- -CUgGCUUUUUGuGCCgCCCUGGgUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.