miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21716 5' -53.2 NC_004812.1 + 136353 1.1 0.00486
Target:  5'- cGACCGAAAAACACGGCGGGACCCAAGg -3'
miRNA:   3'- -CUGGCUUUUUGUGCCGCCCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 29774 0.9 0.087539
Target:  5'- aACCGggGAggggcgggGCGCGGCGGGGCCCGGGg -3'
miRNA:   3'- cUGGCuuUU--------UGUGCCGCCCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 155282 0.9 0.087539
Target:  5'- aACCGggGAggggcgggGCGCGGCGGGGCCCGGGg -3'
miRNA:   3'- cUGGCuuUU--------UGUGCCGCCCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 14465 0.85 0.178173
Target:  5'- uGGCCGGAGGGCGCgggGGCGGGGCCCuGGa -3'
miRNA:   3'- -CUGGCUUUUUGUG---CCGCCCUGGGuUC- -5'
21716 5' -53.2 NC_004812.1 + 36780 0.83 0.246602
Target:  5'- gGGCCGggGGGCGCgGGCGcGGGCUCAGGg -3'
miRNA:   3'- -CUGGCuuUUUGUG-CCGC-CCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 5879 0.83 0.246602
Target:  5'- gGGCCGggGGGCGCgGGCGcGGGCUCAGGg -3'
miRNA:   3'- -CUGGCuuUUUGUG-CCGC-CCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 139103 0.82 0.26521
Target:  5'- aGCCGAAAGACGCGGCuGGGGCCg--- -3'
miRNA:   3'- cUGGCUUUUUGUGCCG-CCCUGGguuc -5'
21716 5' -53.2 NC_004812.1 + 103255 0.82 0.271661
Target:  5'- cGGCCGGGcGACGCGGCGGcGACCCc-- -3'
miRNA:   3'- -CUGGCUUuUUGUGCCGCC-CUGGGuuc -5'
21716 5' -53.2 NC_004812.1 + 30253 0.81 0.335429
Target:  5'- cGGCCGcGGGGACACGcGCGGGGCCCu-- -3'
miRNA:   3'- -CUGGC-UUUUUGUGC-CGCCCUGGGuuc -5'
21716 5' -53.2 NC_004812.1 + 155761 0.81 0.335429
Target:  5'- cGGCCGcGGGGACACGcGCGGGGCCCu-- -3'
miRNA:   3'- -CUGGC-UUUUUGUGC-CGCCCUGGGuuc -5'
21716 5' -53.2 NC_004812.1 + 35542 0.8 0.343154
Target:  5'- cGCgCGggGGGCGCgGGCGGGGCCCGGa -3'
miRNA:   3'- cUG-GCuuUUUGUG-CCGCCCUGGGUUc -5'
21716 5' -53.2 NC_004812.1 + 58417 0.8 0.358986
Target:  5'- aGGCUGggGGG-GCGGCGGGACCCGGc -3'
miRNA:   3'- -CUGGCuuUUUgUGCCGCCCUGGGUUc -5'
21716 5' -53.2 NC_004812.1 + 27791 0.8 0.358986
Target:  5'- cGCCGggGGAgAgGGCGGGGCCgGGGg -3'
miRNA:   3'- cUGGCuuUUUgUgCCGCCCUGGgUUC- -5'
21716 5' -53.2 NC_004812.1 + 67242 0.8 0.358986
Target:  5'- cGACCGugcuuGAGCACGGUcgccaggaGGGGCCCGAGc -3'
miRNA:   3'- -CUGGCuu---UUUGUGCCG--------CCCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 15906 0.8 0.37532
Target:  5'- gGACCGGAAGACACGGCGGG--CgGGGg -3'
miRNA:   3'- -CUGGCUUUUUGUGCCGCCCugGgUUC- -5'
21716 5' -53.2 NC_004812.1 + 106713 0.79 0.400748
Target:  5'- -cCCGggGGGCccucggggucgGCGGCGGGGCCCAu- -3'
miRNA:   3'- cuGGCuuUUUG-----------UGCCGCCCUGGGUuc -5'
21716 5' -53.2 NC_004812.1 + 97990 0.79 0.418298
Target:  5'- gGGCCGGGAGGCACGGgGgcucGGGCUCGAGg -3'
miRNA:   3'- -CUGGCUUUUUGUGCCgC----CCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 54864 0.78 0.454755
Target:  5'- -cCCGggGguggcgGGCACGG-GGGACCCAGGg -3'
miRNA:   3'- cuGGCuuU------UUGUGCCgCCCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 18461 0.77 0.483194
Target:  5'- cGGCgGggGGGCGCGGCcccgcgcccgcGGGGCCCAGa -3'
miRNA:   3'- -CUGgCuuUUUGUGCCG-----------CCCUGGGUUc -5'
21716 5' -53.2 NC_004812.1 + 8451 0.77 0.492864
Target:  5'- cGCCGGAGcGCuCGGCGGG-CCCGGGu -3'
miRNA:   3'- cUGGCUUUuUGuGCCGCCCuGGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.