miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21716 5' -53.2 NC_004812.1 + 46295 0.75 0.593543
Target:  5'- cGGCCGGAGGcCGCGGCGGGccGCgCGGGc -3'
miRNA:   3'- -CUGGCUUUUuGUGCCGCCC--UGgGUUC- -5'
21716 5' -53.2 NC_004812.1 + 151531 0.77 0.522381
Target:  5'- cGACgCGGAcgGCgACGGCGGGGCCgGGGc -3'
miRNA:   3'- -CUG-GCUUuuUG-UGCCGCCCUGGgUUC- -5'
21716 5' -53.2 NC_004812.1 + 128990 0.76 0.532374
Target:  5'- cGCCGuc-AGCGCGGCGGGccgcgggcgcggGCCCGGGg -3'
miRNA:   3'- cUGGCuuuUUGUGCCGCCC------------UGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 138715 0.76 0.532374
Target:  5'- cGACCGc--GGCGCGGCGGG-CCCGc- -3'
miRNA:   3'- -CUGGCuuuUUGUGCCGCCCuGGGUuc -5'
21716 5' -53.2 NC_004812.1 + 122275 0.76 0.542435
Target:  5'- gGACCacGggGGGCGCGGCGGcGCCgGAGg -3'
miRNA:   3'- -CUGG--CuuUUUGUGCCGCCcUGGgUUC- -5'
21716 5' -53.2 NC_004812.1 + 54608 0.76 0.562736
Target:  5'- uGGCCGcGGGGACG-GGCGGGGCCgGAGa -3'
miRNA:   3'- -CUGGC-UUUUUGUgCCGCCCUGGgUUC- -5'
21716 5' -53.2 NC_004812.1 + 7944 0.76 0.562736
Target:  5'- cGGCCGggGGGCGCguccGGgGGGGgCCGAGa -3'
miRNA:   3'- -CUGGCuuUUUGUG----CCgCCCUgGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 154612 0.76 0.572964
Target:  5'- -cCCGAGcGACcgcCGGCGGGACCCGc- -3'
miRNA:   3'- cuGGCUUuUUGu--GCCGCCCUGGGUuc -5'
21716 5' -53.2 NC_004812.1 + 152630 0.75 0.583236
Target:  5'- uGGCCGAGGGcUACGGCGGcGACCUg-- -3'
miRNA:   3'- -CUGGCUUUUuGUGCCGCC-CUGGGuuc -5'
21716 5' -53.2 NC_004812.1 + 25739 0.77 0.522381
Target:  5'- gGGgCGAGAAACACGGCccccGGGGCCCc-- -3'
miRNA:   3'- -CUgGCUUUUUGUGCCG----CCCUGGGuuc -5'
21716 5' -53.2 NC_004812.1 + 31736 0.77 0.502621
Target:  5'- cGGCCGAGAGGCGCggGGCGGGggcgcggcGCCCGc- -3'
miRNA:   3'- -CUGGCUUUUUGUG--CCGCCC--------UGGGUuc -5'
21716 5' -53.2 NC_004812.1 + 8451 0.77 0.492864
Target:  5'- cGCCGGAGcGCuCGGCGGG-CCCGGGu -3'
miRNA:   3'- cUGGCUUUuUGuGCCGCCCuGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 155282 0.9 0.087539
Target:  5'- aACCGggGAggggcgggGCGCGGCGGGGCCCGGGg -3'
miRNA:   3'- cUGGCuuUU--------UGUGCCGCCCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 5879 0.83 0.246602
Target:  5'- gGGCCGggGGGCGCgGGCGcGGGCUCAGGg -3'
miRNA:   3'- -CUGGCuuUUUGUG-CCGC-CCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 155761 0.81 0.335429
Target:  5'- cGGCCGcGGGGACACGcGCGGGGCCCu-- -3'
miRNA:   3'- -CUGGC-UUUUUGUGC-CGCCCUGGGuuc -5'
21716 5' -53.2 NC_004812.1 + 35542 0.8 0.343154
Target:  5'- cGCgCGggGGGCGCgGGCGGGGCCCGGa -3'
miRNA:   3'- cUG-GCuuUUUGUG-CCGCCCUGGGUUc -5'
21716 5' -53.2 NC_004812.1 + 58417 0.8 0.358986
Target:  5'- aGGCUGggGGG-GCGGCGGGACCCGGc -3'
miRNA:   3'- -CUGGCuuUUUgUGCCGCCCUGGGUUc -5'
21716 5' -53.2 NC_004812.1 + 67242 0.8 0.358986
Target:  5'- cGACCGugcuuGAGCACGGUcgccaggaGGGGCCCGAGc -3'
miRNA:   3'- -CUGGCuu---UUUGUGCCG--------CCCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 27791 0.8 0.358986
Target:  5'- cGCCGggGGAgAgGGCGGGGCCgGGGg -3'
miRNA:   3'- cUGGCuuUUUgUgCCGCCCUGGgUUC- -5'
21716 5' -53.2 NC_004812.1 + 97990 0.79 0.418298
Target:  5'- gGGCCGGGAGGCACGGgGgcucGGGCUCGAGg -3'
miRNA:   3'- -CUGGCUUUUUGUGCCgC----CCUGGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.