miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21716 5' -53.2 NC_004812.1 + 27 0.69 0.884527
Target:  5'- cGCgCGAAAAuaaacGCGCGGCGGG-CCgCGGGc -3'
miRNA:   3'- cUG-GCUUUU-----UGUGCCGCCCuGG-GUUC- -5'
21716 5' -53.2 NC_004812.1 + 99 0.73 0.696906
Target:  5'- gGGCCGG--GGCGCGcGCGGGGCCgGGa -3'
miRNA:   3'- -CUGGCUuuUUGUGC-CGCCCUGGgUUc -5'
21716 5' -53.2 NC_004812.1 + 204 0.73 0.717196
Target:  5'- -cCCG-GAAACGCGGggagggGGGGCCCAAGg -3'
miRNA:   3'- cuGGCuUUUUGUGCCg-----CCCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 1212 0.7 0.854613
Target:  5'- cGGCCGggGgcGGCGCcGCGGGggcuccuccccGCCCGGGc -3'
miRNA:   3'- -CUGGCuuU--UUGUGcCGCCC-----------UGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 1439 0.73 0.707083
Target:  5'- gGGCCGggGccgcgagggccgGGCACGGCGGcGACgCCGGc -3'
miRNA:   3'- -CUGGCuuU------------UUGUGCCGCC-CUG-GGUUc -5'
21716 5' -53.2 NC_004812.1 + 1786 0.66 0.97502
Target:  5'- cGCCGAcgGGAGCGCGuGCaucGGGCCCcGGc -3'
miRNA:   3'- cUGGCU--UUUUGUGC-CGc--CCUGGGuUC- -5'
21716 5' -53.2 NC_004812.1 + 2137 0.67 0.962967
Target:  5'- -uCCGggGAGgcccCGCgGGCGGGGCUCGc- -3'
miRNA:   3'- cuGGCuuUUU----GUG-CCGCCCUGGGUuc -5'
21716 5' -53.2 NC_004812.1 + 2565 0.7 0.854613
Target:  5'- cGGCgGcAGGGGCACgGGCGugucGGGCCCGAGg -3'
miRNA:   3'- -CUGgC-UUUUUGUG-CCGC----CCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 2716 0.74 0.676392
Target:  5'- cGGCCGGAGgccAGCACGGCGcGGCgCAGGu -3'
miRNA:   3'- -CUGGCUUU---UUGUGCCGCcCUGgGUUC- -5'
21716 5' -53.2 NC_004812.1 + 2842 0.67 0.962967
Target:  5'- cGACCcccgcACGCGGCGcGACgCCGAGg -3'
miRNA:   3'- -CUGGcuuuuUGUGCCGCcCUG-GGUUC- -5'
21716 5' -53.2 NC_004812.1 + 3219 0.77 0.512462
Target:  5'- -cCCGAGGcGCGCGGCGGG-CCgAAGg -3'
miRNA:   3'- cuGGCUUUuUGUGCCGCCCuGGgUUC- -5'
21716 5' -53.2 NC_004812.1 + 3312 0.7 0.877381
Target:  5'- -cCCGAGGAGgagcCAgGGgaGGGGCCCGAGg -3'
miRNA:   3'- cuGGCUUUUU----GUgCCg-CCCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 3482 0.76 0.532374
Target:  5'- cGCCGuc-AGCGCGGCGGGccgcgggcgcggGCCCGGGg -3'
miRNA:   3'- cUGGCuuuUUGUGCCGCCC------------UGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 4106 0.72 0.766445
Target:  5'- gGGCCGuccuccccGGCGcCGGCGGGGCCCu-- -3'
miRNA:   3'- -CUGGCuuu-----UUGU-GCCGCCCUGGGuuc -5'
21716 5' -53.2 NC_004812.1 + 4403 0.7 0.877381
Target:  5'- cGGCCGGcgGcCAUGGCGuaGCCCAGGu -3'
miRNA:   3'- -CUGGCUuuUuGUGCCGCccUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 5068 0.66 0.969416
Target:  5'- cGGgCGGGAGACuCGG-GGGGCCgGGGu -3'
miRNA:   3'- -CUgGCUUUUUGuGCCgCCCUGGgUUC- -5'
21716 5' -53.2 NC_004812.1 + 5134 0.69 0.889393
Target:  5'- gGGCCGcccGGGGACgGCGGCGucggcccgcgguccGGGCCCGAGu -3'
miRNA:   3'- -CUGGC---UUUUUG-UGCCGC--------------CCUGGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 5339 0.66 0.965977
Target:  5'- cGCCGcccggggucggcGGGGGCGCGGCGGcgucgauGACCCAn- -3'
miRNA:   3'- cUGGC------------UUUUUGUGCCGCC-------CUGGGUuc -5'
21716 5' -53.2 NC_004812.1 + 5382 0.73 0.727233
Target:  5'- cACCGAGu--CGCGGCGcGGGgCCGGGg -3'
miRNA:   3'- cUGGCUUuuuGUGCCGC-CCUgGGUUC- -5'
21716 5' -53.2 NC_004812.1 + 5409 0.71 0.83839
Target:  5'- -uCCcAGGGACGCGGCGGG-CCgGGGg -3'
miRNA:   3'- cuGGcUUUUUGUGCCGCCCuGGgUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.