miRNA display CGI


Results 1 - 20 of 981 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21717 3' -61.6 NC_004812.1 + 67312 0.66 0.697946
Target:  5'- aCUGCGCgaagCGCGACGCC-GGGGCu--- -3'
miRNA:   3'- -GGCGCGg---GUGCUGCGGgCCCUGcuuc -5'
21717 3' -61.6 NC_004812.1 + 152948 0.66 0.697946
Target:  5'- cCUGCGCCCccugcuggcCGACGCagaCGcGGGCGGc- -3'
miRNA:   3'- -GGCGCGGGu--------GCUGCGg--GC-CCUGCUuc -5'
21717 3' -61.6 NC_004812.1 + 18541 0.66 0.697946
Target:  5'- cUCGCGCUCGCGGCcaGCgCGGcGCGGGc -3'
miRNA:   3'- -GGCGCGGGUGCUG--CGgGCCcUGCUUc -5'
21717 3' -61.6 NC_004812.1 + 71057 0.66 0.697946
Target:  5'- gCCGCcCCUGCGGCgGUUCGGGcggcGCGggGc -3'
miRNA:   3'- -GGCGcGGGUGCUG-CGGGCCC----UGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 119905 0.66 0.706467
Target:  5'- gCCGCGCCC-CGcagccccGCaGCCCGaGGCGGGc -3'
miRNA:   3'- -GGCGCGGGuGC-------UG-CGGGCcCUGCUUc -5'
21717 3' -61.6 NC_004812.1 + 70575 0.66 0.697946
Target:  5'- gCCGCGagagggCCGCGuugGCCgagaGGGGCGggGg -3'
miRNA:   3'- -GGCGCg-----GGUGCug-CGGg---CCCUGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 154245 0.66 0.697946
Target:  5'- aCCGCGaCgCCGCG-CGCgCCGGGccCGAc- -3'
miRNA:   3'- -GGCGC-G-GGUGCuGCG-GGCCCu-GCUuc -5'
21717 3' -61.6 NC_004812.1 + 30360 0.66 0.697946
Target:  5'- gUCGCGUcgagCCGCucGGCGgCCGGGuCGggGc -3'
miRNA:   3'- -GGCGCG----GGUG--CUGCgGGCCCuGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 91068 0.66 0.697946
Target:  5'- gCGCGUCU-CGAaGaCCgGGGGCGAGGg -3'
miRNA:   3'- gGCGCGGGuGCUgC-GGgCCCUGCUUC- -5'
21717 3' -61.6 NC_004812.1 + 144965 0.66 0.697946
Target:  5'- cCCGUGCgCgGCGAgCGUCUGG-ACGGAGc -3'
miRNA:   3'- -GGCGCG-GgUGCU-GCGGGCCcUGCUUC- -5'
21717 3' -61.6 NC_004812.1 + 143347 0.66 0.697946
Target:  5'- uCCGcCGCCC-CGACGucggaggccuCCCGGuACGAGc -3'
miRNA:   3'- -GGC-GCGGGuGCUGC----------GGGCCcUGCUUc -5'
21717 3' -61.6 NC_004812.1 + 107739 0.66 0.697946
Target:  5'- gCGCGCCa--GG-GCCCGGGccuugACGAGGc -3'
miRNA:   3'- gGCGCGGgugCUgCGGGCCC-----UGCUUC- -5'
21717 3' -61.6 NC_004812.1 + 66601 0.66 0.703632
Target:  5'- gCCG-GCCCGCGggccgcuccACGCCCaggccgucggcacGGGCGAAGc -3'
miRNA:   3'- -GGCgCGGGUGC---------UGCGGGc------------CCUGCUUC- -5'
21717 3' -61.6 NC_004812.1 + 38012 0.66 0.697946
Target:  5'- gCCGCgGUCCuCGaACGCCCcccGGACGgcGg -3'
miRNA:   3'- -GGCG-CGGGuGC-UGCGGGc--CCUGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 114748 0.66 0.697946
Target:  5'- gCCGCaGCCCGuu-CuCCCGGGACGuuGg -3'
miRNA:   3'- -GGCG-CGGGUgcuGcGGGCCCUGCuuC- -5'
21717 3' -61.6 NC_004812.1 + 4475 0.66 0.697946
Target:  5'- aCCcCGCCCACGGC-CUCuGGAUGAc- -3'
miRNA:   3'- -GGcGCGGGUGCUGcGGGcCCUGCUuc -5'
21717 3' -61.6 NC_004812.1 + 65167 0.66 0.704577
Target:  5'- -gGaCGCCCAcCGGCGCaucaccgaccccgaCCGGGACGu-- -3'
miRNA:   3'- ggC-GCGGGU-GCUGCG--------------GGCCCUGCuuc -5'
21717 3' -61.6 NC_004812.1 + 63419 0.66 0.748278
Target:  5'- -aGCGCCCGCGAcaggaucugcaUcugggugucggccguGCUCGGGGCGGc- -3'
miRNA:   3'- ggCGCGGGUGCU-----------G---------------CGGGCCCUGCUuc -5'
21717 3' -61.6 NC_004812.1 + 57862 0.66 0.697946
Target:  5'- gCCGCGCuCCAgGGCGCgggCGGGaACGc-- -3'
miRNA:   3'- -GGCGCG-GGUgCUGCGg--GCCC-UGCuuc -5'
21717 3' -61.6 NC_004812.1 + 138696 0.66 0.697946
Target:  5'- aCCGgGCCU-CG-CGCCC-GGACGAc- -3'
miRNA:   3'- -GGCgCGGGuGCuGCGGGcCCUGCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.