miRNA display CGI

Results 1 - 20 of 981 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21717	3'	-61.6	NC_004812.1	+	81420	0.77	0.190851
	Target:  5'- aCCGCGUcggCCAUGGCGUCCGGGGCccAGg -3' miRNA:   3'- -GGCGCG---GGUGCUGCGGGCCCUGcuUC- -5'
21717	3'	-61.6	NC_004812.1	+	149066	0.79	0.14672
	Target:  5'- cCCGCGCCCgcccccgaguggGCGggaggggcggcGCGCCgCGGGGCGggGg -3' miRNA:   3'- -GGCGCGGG------------UGC-----------UGCGG-GCCCUGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	64063	0.79	0.151773
	Target:  5'- gCCGUGCCgGCGAugaggaggaggacgaUGCCgGGGGCGAAGa -3' miRNA:   3'- -GGCGCGGgUGCU---------------GCGGgCCCUGCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	151268	0.78	0.161188
	Target:  5'- gCCGCGCCCccgccgaccccggGCGGCGCCCcggcGGACGAc- -3' miRNA:   3'- -GGCGCGGG-------------UGCUGCGGGc---CCUGCUuc -5'
21717	3'	-61.6	NC_004812.1	+	18595	0.78	0.161576
	Target:  5'- cCCGCGCCgGCGGCGuCCCGGGGg---- -3' miRNA:   3'- -GGCGCGGgUGCUGC-GGGCCCUgcuuc -5'
21717	3'	-61.6	NC_004812.1	+	98633	0.77	0.182041
	Target:  5'- gUCGCGgCCGCGcuGCGCCCGGGcGCGAc- -3' miRNA:   3'- -GGCGCgGGUGC--UGCGGGCCC-UGCUuc -5'
21717	3'	-61.6	NC_004812.1	+	121860	0.77	0.1864
	Target:  5'- gCCGCGgcgaCCACGGCGCagaGGGGCGggGc -3' miRNA:   3'- -GGCGCg---GGUGCUGCGgg-CCCUGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	156000	0.77	0.189506
	Target:  5'- gCGUGCUCGCggcgcgggggagggGACGCCCGGGGcCGggGg -3' miRNA:   3'- gGCGCGGGUG--------------CUGCGGGCCCU-GCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	151984	0.77	0.190851
	Target:  5'- cCCGCGCCCGugugGGCGCCCGagcuGGGCGAc- -3' miRNA:   3'- -GGCGCGGGUg---CUGCGGGC----CCUGCUuc -5'
21717	3'	-61.6	NC_004812.1	+	30738	0.79	0.136408
	Target:  5'- uCCGCGCaggugucgagcuCCACGAUGCCCGGGGCc--- -3' miRNA:   3'- -GGCGCG------------GGUGCUGCGGGCCCUGcuuc -5'
21717	3'	-61.6	NC_004812.1	+	651	0.8	0.133121
	Target:  5'- gUGCGCCCACcaacgccGCGCCCGGGcggcGCGAGGg -3' miRNA:   3'- gGCGCGGGUGc------UGCGGGCCC----UGCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	155848	0.8	0.123693
	Target:  5'- -gGgGCCCGCGGCGCCgGGaGGCGAGGc -3' miRNA:   3'- ggCgCGGGUGCUGCGGgCC-CUGCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	6922	0.87	0.040755
	Target:  5'- gCUGCGCCCGCGGgGCCgGGGugGggGg -3' miRNA:   3'- -GGCGCGGGUGCUgCGGgCCCugCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	139553	0.85	0.061359
	Target:  5'- gCGCGUCCGCGGCGgCCGGGAcCGAGGc -3' miRNA:   3'- gGCGCGGGUGCUGCgGGCCCU-GCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	73448	0.84	0.062938
	Target:  5'- gCCGCGCgCCACGGCGCCagGGGGuCGGAGg -3' miRNA:   3'- -GGCGCG-GGUGCUGCGGg-CCCU-GCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	125135	0.84	0.06689
	Target:  5'- gCCGCGCCCGCGgcuccacgcggccgcGCGCgCCGGGGCGGGa -3' miRNA:   3'- -GGCGCGGGUGC---------------UGCG-GGCCCUGCUUc -5'
21717	3'	-61.6	NC_004812.1	+	136431	0.83	0.075143
	Target:  5'- aCGCGCCCGCu-CGCCCGGGuCGggGc -3' miRNA:   3'- gGCGCGGGUGcuGCGGGCCCuGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	147981	0.81	0.099009
	Target:  5'- uCCGUGCUCAUGGCGCCgGGcGGCGggGc -3' miRNA:   3'- -GGCGCGGGUGCUGCGGgCC-CUGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	154991	0.81	0.108538
	Target:  5'- cCCGCGCgCACGgucccucgcgcgggGCGCCCGGaGGCGggGa -3' miRNA:   3'- -GGCGCGgGUGC--------------UGCGGGCC-CUGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	116117	0.81	0.109347
	Target:  5'- cCCGCGCCCGCccucGGgGCCCGGGcccCGAGGg -3' miRNA:   3'- -GGCGCGGGUG----CUgCGGGCCCu--GCUUC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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