Results 1 - 20 of 981 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21717 | 3' | -61.6 | NC_004812.1 | + | 136740 | 1.1 | 0.001055 |
Target: 5'- cCCGCGCCCACGACGCCCGGGACGAAGa -3' miRNA: 3'- -GGCGCGGGUGCUGCGGGCCCUGCUUC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 17905 | 0.89 | 0.031497 |
Target: 5'- gCCGCGCCCGCGGuCGUCCGGGcGCGAGGc -3' miRNA: 3'- -GGCGCGGGUGCU-GCGGGCCC-UGCUUC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 37823 | 0.87 | 0.040755 |
Target: 5'- gCUGCGCCCGCGGgGCCgGGGugGggGg -3' miRNA: 3'- -GGCGCGGGUGCUgCGGgCCCugCuuC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 6922 | 0.87 | 0.040755 |
Target: 5'- gCUGCGCCCGCGGgGCCgGGGugGggGg -3' miRNA: 3'- -GGCGCGGGUGCUgCGGgCCCugCuuC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 72081 | 0.86 | 0.050035 |
Target: 5'- gCGCGgCCugGACGCCCGGGAUGGGa -3' miRNA: 3'- gGCGCgGGugCUGCGGGCCCUGCUUc -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 139553 | 0.85 | 0.061359 |
Target: 5'- gCGCGUCCGCGGCGgCCGGGAcCGAGGc -3' miRNA: 3'- gGCGCGGGUGCUGCgGGCCCU-GCUUC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 73448 | 0.84 | 0.062938 |
Target: 5'- gCCGCGCgCCACGGCGCCagGGGGuCGGAGg -3' miRNA: 3'- -GGCGCG-GGUGCUGCGGg-CCCU-GCUUC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 156036 | 0.84 | 0.06689 |
Target: 5'- gCCGCGCCCGCGgcuccacgcggccgcGCGCgCCGGGGCGGGa -3' miRNA: 3'- -GGCGCGGGUGC---------------UGCG-GGCCCUGCUUc -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 125135 | 0.84 | 0.06689 |
Target: 5'- gCCGCGCCCGCGgcuccacgcggccgcGCGCgCCGGGGCGGGa -3' miRNA: 3'- -GGCGCGGGUGC---------------UGCG-GGCCCUGCUUc -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 11300 | 0.83 | 0.073269 |
Target: 5'- gCGCGCCgCGCGggGCGCCgCGGGGCGggGg -3' miRNA: 3'- gGCGCGG-GUGC--UGCGG-GCCCUGCuuC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 136431 | 0.83 | 0.075143 |
Target: 5'- aCGCGCCCGCu-CGCCCGGGuCGggGc -3' miRNA: 3'- gGCGCGGGUGcuGCGGGCCCuGCuuC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 147981 | 0.81 | 0.099009 |
Target: 5'- uCCGUGCUCAUGGCGCCgGGcGGCGggGc -3' miRNA: 3'- -GGCGCGGGUGCUGCGGgCC-CUGCuuC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 130708 | 0.81 | 0.101504 |
Target: 5'- gCGCGCCCGCGGCGCUgggcgCGGGcgccGCGGAGg -3' miRNA: 3'- gGCGCGGGUGCUGCGG-----GCCC----UGCUUC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 29483 | 0.81 | 0.108538 |
Target: 5'- cCCGCGCgCACGgucccucgcgcgggGCGCCCGGaGGCGggGa -3' miRNA: 3'- -GGCGCGgGUGC--------------UGCGGGCC-CUGCuuC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 154991 | 0.81 | 0.108538 |
Target: 5'- cCCGCGCgCACGgucccucgcgcgggGCGCCCGGaGGCGggGa -3' miRNA: 3'- -GGCGCGgGUGC--------------UGCGGGCC-CUGCuuC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 116117 | 0.81 | 0.109347 |
Target: 5'- cCCGCGCCCGCccucGGgGCCCGGGcccCGAGGg -3' miRNA: 3'- -GGCGCGGGUG----CUgCGGGCCCu--GCUUC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 78775 | 0.81 | 0.114888 |
Target: 5'- gCgGCGCCCugGACGCCCuGGcGCGggGc -3' miRNA: 3'- -GgCGCGGGugCUGCGGGcCC-UGCuuC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 62352 | 0.8 | 0.120691 |
Target: 5'- gCGCGCCCGCGGCGCgUGGGuCGGc- -3' miRNA: 3'- gGCGCGGGUGCUGCGgGCCCuGCUuc -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 30340 | 0.8 | 0.123693 |
Target: 5'- -gGgGCCCGCGGCGCCgGGaGGCGAGGc -3' miRNA: 3'- ggCgCGGGUGCUGCGGgCC-CUGCUUC- -5' |
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21717 | 3' | -61.6 | NC_004812.1 | + | 155848 | 0.8 | 0.123693 |
Target: 5'- -gGgGCCCGCGGCGCCgGGaGGCGAGGc -3' miRNA: 3'- ggCgCGGGUGCUGCGGgCC-CUGCUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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