miRNA display CGI

Results 1 - 20 of 981 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21717	3'	-61.6	NC_004812.1	+	7	0.68	0.592189
	Target:  5'- cCCGCGUuuCCGgGGCGCgCgcguuuucggGGGGCGggGg -3' miRNA:   3'- -GGCGCG--GGUgCUGCGgG----------CCCUGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	125	0.67	0.640387
	Target:  5'- gCC-CGCCCGgGAgccCGCCCGGGAg---- -3' miRNA:   3'- -GGcGCGGGUgCU---GCGGGCCCUgcuuc -5'
21717	3'	-61.6	NC_004812.1	+	160	0.67	0.678877
	Target:  5'- gCCGCGCCCGCG--GCCCGccGCGc-- -3' miRNA:   3'- -GGCGCGGGUGCugCGGGCccUGCuuc -5'
21717	3'	-61.6	NC_004812.1	+	190	0.68	0.621079
	Target:  5'- uUCGCGCgCGCGcCGCCgGGG--GAGGg -3' miRNA:   3'- -GGCGCGgGUGCuGCGGgCCCugCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	232	0.67	0.687479
	Target:  5'- -gGCuCCCGCGGgGCCCaaggcucccgcgcGGGAgGAGGg -3' miRNA:   3'- ggCGcGGGUGCUgCGGG-------------CCCUgCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	444	0.72	0.364493
	Target:  5'- gCGCGCCCGCcGCgaGCCCGGGcCGccGg -3' miRNA:   3'- gGCGCGGGUGcUG--CGGGCCCuGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	527	0.72	0.403634
	Target:  5'- gCGgGCCCGCG-CGCCCGGGcCc--- -3' miRNA:   3'- gGCgCGGGUGCuGCGGGCCCuGcuuc -5'
21717	3'	-61.6	NC_004812.1	+	557	0.73	0.349589
	Target:  5'- aCGCGCCgCGCGACGCCCGcccgucccgcGGcGCGGc- -3' miRNA:   3'- gGCGCGG-GUGCUGCGGGC----------CC-UGCUuc -5'
21717	3'	-61.6	NC_004812.1	+	570	0.67	0.678877
	Target:  5'- gCGCGgCCGCGugGagCCGcGGGCGcGGc -3' miRNA:   3'- gGCGCgGGUGCugCg-GGC-CCUGCuUC- -5'
21717	3'	-61.6	NC_004812.1	+	651	0.8	0.133121
	Target:  5'- gUGCGCCCACcaacgccGCGCCCGGGcggcGCGAGGg -3' miRNA:   3'- gGCGCGGGUGc------UGCGGGCCC----UGCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	690	0.69	0.554057
	Target:  5'- cCCGCgGCCCggccuccucggcGCGGCaGCCCGGG-CGccGg -3' miRNA:   3'- -GGCG-CGGG------------UGCUG-CGGGCCCuGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	801	0.68	0.611433
	Target:  5'- gCCGCcCCCGcCGcCGCCCGGc-CGggGg -3' miRNA:   3'- -GGCGcGGGU-GCuGCGGGCCcuGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	801	0.67	0.659672
	Target:  5'- uUCGCuuccGCCCACGGcCGgCCGGGaaGCGGu- -3' miRNA:   3'- -GGCG----CGGGUGCU-GCgGGCCC--UGCUuc -5'
21717	3'	-61.6	NC_004812.1	+	1441	0.69	0.554057
	Target:  5'- gCCGgGgCCGCGAgGgCCGGGcACGgcGg -3' miRNA:   3'- -GGCgCgGGUGCUgCgGGCCC-UGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	1672	0.74	0.300898
	Target:  5'- gCCGCgGCgCCGCGGCccGCCCGcGGCGggGg -3' miRNA:   3'- -GGCG-CG-GGUGCUG--CGGGCcCUGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	1775	0.68	0.601801
	Target:  5'- gCCGCGCCC-CG-CGCCgaCGGGAgCGc-- -3' miRNA:   3'- -GGCGCGGGuGCuGCGG--GCCCU-GCuuc -5'
21717	3'	-61.6	NC_004812.1	+	1896	0.68	0.629767
	Target:  5'- gCCcCGCCCGCGGCaCCCcguauauGGGcCGAGGc -3' miRNA:   3'- -GGcGCGGGUGCUGcGGG-------CCCuGCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	1955	0.73	0.335123
	Target:  5'- gCCGCGCgCGCGccggGCGCCgGGGG-GAGGg -3' miRNA:   3'- -GGCGCGgGUGC----UGCGGgCCCUgCUUC- -5'
21717	3'	-61.6	NC_004812.1	+	2002	0.71	0.436798
	Target:  5'- uCC-CGCCgGCGGuCGCUCGGGGCGccGa -3' miRNA:   3'- -GGcGCGGgUGCU-GCGGGCCCUGCuuC- -5'
21717	3'	-61.6	NC_004812.1	+	2081	0.66	0.744625
	Target:  5'- cCCGCGUCUACcaguccucggGGCgGCCCGGGcCGc-- -3' miRNA:   3'- -GGCGCGGGUG----------CUG-CGGGCCCuGCuuc -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home