miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21718 3' -63.1 NC_004812.1 + 62675 0.66 0.577144
Target:  5'- gGACGGCGCgUCGCCgugcacguguaCGGCAcGC-GCc- -3'
miRNA:   3'- aCUGCCGCG-AGCGG-----------GCCGU-CGaCGac -5'
21718 3' -63.1 NC_004812.1 + 142517 0.66 0.564513
Target:  5'- --cCGGa--UCGCCCccgguucccgauggGGCGGCUGCUGg -3'
miRNA:   3'- acuGCCgcgAGCGGG--------------CCGUCGACGAC- -5'
21718 3' -63.1 NC_004812.1 + 56257 0.66 0.586903
Target:  5'- cGGgGGCGCgccccugcgccUCGCCCgcGGCGGCccGCUc -3'
miRNA:   3'- aCUgCCGCG-----------AGCGGG--CCGUCGa-CGAc -5'
21718 3' -63.1 NC_004812.1 + 109320 0.66 0.577144
Target:  5'- cGGCGGCGCUgGa--GGCGGCgccgcGCUa -3'
miRNA:   3'- aCUGCCGCGAgCgggCCGUCGa----CGAc -5'
21718 3' -63.1 NC_004812.1 + 75824 0.66 0.577144
Target:  5'- cGGCGGCag-CGCCgGGUGG-UGCUGg -3'
miRNA:   3'- aCUGCCGcgaGCGGgCCGUCgACGAC- -5'
21718 3' -63.1 NC_004812.1 + 55639 0.66 0.548108
Target:  5'- cGcCGGCGCUCGCggacguccgCGGCGGC-GCg- -3'
miRNA:   3'- aCuGCCGCGAGCGg--------GCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 94355 0.66 0.557741
Target:  5'- -cGCGGCGCggcCCCGGC-GC-GCUGg -3'
miRNA:   3'- acUGCCGCGagcGGGCCGuCGaCGAC- -5'
21718 3' -63.1 NC_004812.1 + 8075 0.66 0.557741
Target:  5'- cGACccCGCcgCGCCCGGCGGCccGCg- -3'
miRNA:   3'- aCUGccGCGa-GCGGGCCGUCGa-CGac -5'
21718 3' -63.1 NC_004812.1 + 23483 0.66 0.548108
Target:  5'- cUGGCGGUggucgaggggcuGCUgucgcacuaCGUgCGGguGCUGCUGg -3'
miRNA:   3'- -ACUGCCG------------CGA---------GCGgGCCguCGACGAC- -5'
21718 3' -63.1 NC_004812.1 + 94389 0.66 0.548108
Target:  5'- cGGCGGCGUaCGCggCGGCGGUggcGUUGg -3'
miRNA:   3'- aCUGCCGCGaGCGg-GCCGUCGa--CGAC- -5'
21718 3' -63.1 NC_004812.1 + 98409 0.66 0.546188
Target:  5'- gGGCGGCGC-CGCagcgucucggugCGGCGGCcGCg- -3'
miRNA:   3'- aCUGCCGCGaGCGg-----------GCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 129097 0.66 0.548108
Target:  5'- cGGCGGCggGCgggCGCgCCGGCgAGgaGCUc -3'
miRNA:   3'- aCUGCCG--CGa--GCG-GGCCG-UCgaCGAc -5'
21718 3' -63.1 NC_004812.1 + 29950 0.66 0.557741
Target:  5'- cGACGGCGUcgacggggCGCgCGaacaGCAGCUGCc- -3'
miRNA:   3'- aCUGCCGCGa-------GCGgGC----CGUCGACGac -5'
21718 3' -63.1 NC_004812.1 + 121011 0.66 0.596692
Target:  5'- --cCGGCGCaCGCCuCGGCGGUcGCc- -3'
miRNA:   3'- acuGCCGCGaGCGG-GCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 8498 0.66 0.548108
Target:  5'- cGGcCGGCgGC-CGCCCGaGCcGGCUGCc- -3'
miRNA:   3'- aCU-GCCG-CGaGCGGGC-CG-UCGACGac -5'
21718 3' -63.1 NC_004812.1 + 71076 0.66 0.586903
Target:  5'- gGGCGGCGCggggCGUUCGGCGaccGgUGCc- -3'
miRNA:   3'- aCUGCCGCGa---GCGGGCCGU---CgACGac -5'
21718 3' -63.1 NC_004812.1 + 122440 0.66 0.586903
Target:  5'- gGGCGGCGuCUCcUCgGGCGGCggggGCg- -3'
miRNA:   3'- aCUGCCGC-GAGcGGgCCGUCGa---CGac -5'
21718 3' -63.1 NC_004812.1 + 57993 0.66 0.561608
Target:  5'- -cACGGCGCUggccaccgacgcccCGCCCucggcgaugaugccGcGCAGCUGCUc -3'
miRNA:   3'- acUGCCGCGA--------------GCGGG--------------C-CGUCGACGAc -5'
21718 3' -63.1 NC_004812.1 + 105057 0.66 0.586903
Target:  5'- -cGCGuGCGCUCGCCgGGaCGGC--CUGg -3'
miRNA:   3'- acUGC-CGCGAGCGGgCC-GUCGacGAC- -5'
21718 3' -63.1 NC_004812.1 + 116968 0.66 0.567422
Target:  5'- -uGCGGCGCgccCGggagauuuCCCGGCAGCcgGcCUGg -3'
miRNA:   3'- acUGCCGCGa--GC--------GGGCCGUCGa-C-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.