miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21718 3' -63.1 NC_004812.1 + 129430 0.71 0.292807
Target:  5'- cGGCGGgGC-CGCgCGGCGGCgGCa- -3'
miRNA:   3'- aCUGCCgCGaGCGgGCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 94674 0.73 0.238364
Target:  5'- cGACGGCGCgggaucccgaGCCCGcGCGGCgGCg- -3'
miRNA:   3'- aCUGCCGCGag--------CGGGC-CGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 73880 0.72 0.249683
Target:  5'- gGGCGGCGUacaGCUCGGCGGCcGCg- -3'
miRNA:   3'- aCUGCCGCGag-CGGGCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 138992 0.72 0.253748
Target:  5'- cGACGGCggagcgGUUCGCCCGggcccgccucgcccGCAGuCUGCUGu -3'
miRNA:   3'- aCUGCCG------CGAGCGGGC--------------CGUC-GACGAC- -5'
21718 3' -63.1 NC_004812.1 + 102301 0.72 0.255507
Target:  5'- gGGCGGCaGCgaucaaggaUCCGGCGGCUGCUGu -3'
miRNA:   3'- aCUGCCG-CGagc------GGGCCGUCGACGAC- -5'
21718 3' -63.1 NC_004812.1 + 108529 0.72 0.255507
Target:  5'- cGGCGGcCGCcgaguacgCGCCCGGCGagucGCUGCg- -3'
miRNA:   3'- aCUGCC-GCGa-------GCGGGCCGU----CGACGac -5'
21718 3' -63.1 NC_004812.1 + 71908 0.72 0.273648
Target:  5'- gGGCGGCGCggCGCCgCGGgC-GCUGCa- -3'
miRNA:   3'- aCUGCCGCGa-GCGG-GCC-GuCGACGac -5'
21718 3' -63.1 NC_004812.1 + 109944 0.72 0.273648
Target:  5'- --cCGGCGCggCGCCCuGGCGgccguggcGCUGCUGu -3'
miRNA:   3'- acuGCCGCGa-GCGGG-CCGU--------CGACGAC- -5'
21718 3' -63.1 NC_004812.1 + 104810 0.72 0.276144
Target:  5'- gGGCGGUGCugaagugcagcuucuUCGCCgCGGCGGCgGuCUGg -3'
miRNA:   3'- aCUGCCGCG---------------AGCGG-GCCGUCGaC-GAC- -5'
21718 3' -63.1 NC_004812.1 + 146314 0.73 0.236704
Target:  5'- aGACGGCGCUCaggcgucgGCgCCGGCaaacgcgcgccgucGGCUGCg- -3'
miRNA:   3'- aCUGCCGCGAG--------CG-GGCCG--------------UCGACGac -5'
21718 3' -63.1 NC_004812.1 + 49467 0.73 0.232867
Target:  5'- aGGCGGCGCugguUCGCCUGaCGGC-GCUGg -3'
miRNA:   3'- aCUGCCGCG----AGCGGGCcGUCGaCGAC- -5'
21718 3' -63.1 NC_004812.1 + 59608 0.73 0.222194
Target:  5'- gGGCGGCGCUCGCgaaCCGGgGGUgGCg- -3'
miRNA:   3'- aCUGCCGCGAGCG---GGCCgUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 153144 0.78 0.113116
Target:  5'- cUGACGGCGCgacCGCCCGccgggcccgacccccGCGGCgGCUGg -3'
miRNA:   3'- -ACUGCCGCGa--GCGGGC---------------CGUCGaCGAC- -5'
21718 3' -63.1 NC_004812.1 + 82714 0.76 0.13681
Target:  5'- cGACGGCgGCUCGCCCgagcccagcagGGCGGCaacggccgGCUGa -3'
miRNA:   3'- aCUGCCG-CGAGCGGG-----------CCGUCGa-------CGAC- -5'
21718 3' -63.1 NC_004812.1 + 56128 0.76 0.145194
Target:  5'- gGugGGCGCggUCGCCCGacgccagccagaaccGCAGCUcGCUGa -3'
miRNA:   3'- aCugCCGCG--AGCGGGC---------------CGUCGA-CGAC- -5'
21718 3' -63.1 NC_004812.1 + 117369 0.76 0.147362
Target:  5'- gGGCGGC-CgCGCCCGGCAGCgcgGCg- -3'
miRNA:   3'- aCUGCCGcGaGCGGGCCGUCGa--CGac -5'
21718 3' -63.1 NC_004812.1 + 115437 0.76 0.147362
Target:  5'- -cGCGGCGCcgagagCGCCUGGCGGCgcgccGCUGg -3'
miRNA:   3'- acUGCCGCGa-----GCGGGCCGUCGa----CGAC- -5'
21718 3' -63.1 NC_004812.1 + 109467 0.76 0.148824
Target:  5'- cGGgGGCGCccgcgggcugcggcaUCGUgCGGCGGCUGCUGc -3'
miRNA:   3'- aCUgCCGCG---------------AGCGgGCCGUCGACGAC- -5'
21718 3' -63.1 NC_004812.1 + 129762 0.75 0.162585
Target:  5'- cGGCGGCGCcCGCCgCGGCGGCguucucGCg- -3'
miRNA:   3'- aCUGCCGCGaGCGG-GCCGUCGa-----CGac -5'
21718 3' -63.1 NC_004812.1 + 108048 0.75 0.166606
Target:  5'- gUGACGGCGCuguUCGCgaCGGaCGGCUGCg- -3'
miRNA:   3'- -ACUGCCGCG---AGCGg-GCC-GUCGACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.