miRNA display CGI


Results 1 - 20 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21718 3' -63.1 NC_004812.1 + 682 0.66 0.596692
Target:  5'- --cCGGCGCUCccgcgGCCCGGCcuccucGGCgcgGCa- -3'
miRNA:   3'- acuGCCGCGAG-----CGGGCCG------UCGa--CGac -5'
21718 3' -63.1 NC_004812.1 + 1153 0.67 0.529006
Target:  5'- cGGCGGCGCgaGCCCGGCcccCcGCUc -3'
miRNA:   3'- aCUGCCGCGagCGGGCCGuc-GaCGAc -5'
21718 3' -63.1 NC_004812.1 + 1464 0.66 0.586903
Target:  5'- cGGCGGCGacgccggcgucCUCGgCgGGCGGCgGCg- -3'
miRNA:   3'- aCUGCCGC-----------GAGCgGgCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 2153 0.67 0.495279
Target:  5'- gGGCGGgGCUCGCggcggcggccaccucCaCGGCGGCgGCg- -3'
miRNA:   3'- aCUGCCgCGAGCG---------------G-GCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 2489 0.66 0.586903
Target:  5'- cGGCGGCGgcCUCGCgggcgggcgagUCGGCGGCgcgGCc- -3'
miRNA:   3'- aCUGCCGC--GAGCG-----------GGCCGUCGa--CGac -5'
21718 3' -63.1 NC_004812.1 + 2551 0.7 0.348955
Target:  5'- cGGCGGUaCUCGCgCGGCGGCagggGCa- -3'
miRNA:   3'- aCUGCCGcGAGCGgGCCGUCGa---CGac -5'
21718 3' -63.1 NC_004812.1 + 3110 0.67 0.49159
Target:  5'- gGA-GGCGCcgccgagcuccUCGCCgGGCAGCgGCg- -3'
miRNA:   3'- aCUgCCGCG-----------AGCGGgCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 3589 0.66 0.548108
Target:  5'- cGGCGGCggGCgggCGCgCCGGCgAGgaGCUc -3'
miRNA:   3'- aCUGCCG--CGa--GCG-GGCCG-UCgaCGAc -5'
21718 3' -63.1 NC_004812.1 + 3786 0.67 0.500835
Target:  5'- cUGACGGCGC--GCaCGGCGGCgacgGCg- -3'
miRNA:   3'- -ACUGCCGCGagCGgGCCGUCGa---CGac -5'
21718 3' -63.1 NC_004812.1 + 3922 0.71 0.292807
Target:  5'- cGGCGGgGC-CGCgCGGCGGCgGCa- -3'
miRNA:   3'- aCUGCCgCGaGCGgGCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 4143 0.67 0.529006
Target:  5'- aGAgGGCgGC-CGCCaGGCGGC-GCUGc -3'
miRNA:   3'- aCUgCCG-CGaGCGGgCCGUCGaCGAC- -5'
21718 3' -63.1 NC_004812.1 + 4218 0.66 0.577144
Target:  5'- cGGCGGCGuCggGCUCGGgGGCgGCg- -3'
miRNA:   3'- aCUGCCGC-GagCGGGCCgUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 4254 0.75 0.162585
Target:  5'- cGGCGGCGCcCGCCgCGGCGGCguucucGCg- -3'
miRNA:   3'- aCUGCCGCGaGCGG-GCCGUCGa-----CGac -5'
21718 3' -63.1 NC_004812.1 + 4435 0.7 0.332058
Target:  5'- -cACGGCGCggGCCaCGGUgccggugaugaaggAGCUGCUGu -3'
miRNA:   3'- acUGCCGCGagCGG-GCCG--------------UCGACGAC- -5'
21718 3' -63.1 NC_004812.1 + 4506 0.69 0.412368
Target:  5'- gGGCGGCaugcuGUUCGaCCagGGCGcGCUGCUGg -3'
miRNA:   3'- aCUGCCG-----CGAGC-GGg-CCGU-CGACGAC- -5'
21718 3' -63.1 NC_004812.1 + 4722 0.67 0.500835
Target:  5'- gGACGGggcgugugccCGCUCGCCCGGgAGgaGaCa- -3'
miRNA:   3'- aCUGCC----------GCGAGCGGGCCgUCgaC-Gac -5'
21718 3' -63.1 NC_004812.1 + 4753 0.67 0.482425
Target:  5'- gGGCGGCgGCUcggCGCCgGGCcacGGCUcgccGCUGg -3'
miRNA:   3'- aCUGCCG-CGA---GCGGgCCG---UCGA----CGAC- -5'
21718 3' -63.1 NC_004812.1 + 4902 0.69 0.404059
Target:  5'- cGGCGGCGCgcgCGCgCCGccGCucGCUGCg- -3'
miRNA:   3'- aCUGCCGCGa--GCG-GGC--CGu-CGACGac -5'
21718 3' -63.1 NC_004812.1 + 4954 0.69 0.379777
Target:  5'- gGGCGGCcgGCgggCGgCCGGCGGCgGCg- -3'
miRNA:   3'- aCUGCCG--CGa--GCgGGCCGUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 5788 0.68 0.455444
Target:  5'- gGuCGGCGCcCGCCUcgGGCuGCgggGCUGc -3'
miRNA:   3'- aCuGCCGCGaGCGGG--CCGuCGa--CGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.