miRNA display CGI


Results 1 - 20 of 275 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21718 3' -63.1 NC_004812.1 + 137345 1.08 0.000696
Target:  5'- gUGACGGCGCUCGCCCGGCAGCUGCUGg -3'
miRNA:   3'- -ACUGCCGCGAGCGGGCCGUCGACGAC- -5'
21718 3' -63.1 NC_004812.1 + 126635 0.78 0.109192
Target:  5'- cGACGGCaGC-C-UCCGGCAGCUGCUGu -3'
miRNA:   3'- aCUGCCG-CGaGcGGGCCGUCGACGAC- -5'
21718 3' -63.1 NC_004812.1 + 153144 0.78 0.113116
Target:  5'- cUGACGGCGCgacCGCCCGccgggcccgacccccGCGGCgGCUGg -3'
miRNA:   3'- -ACUGCCGCGa--GCGGGC---------------CGUCGaCGAC- -5'
21718 3' -63.1 NC_004812.1 + 27636 0.78 0.113116
Target:  5'- cUGACGGCGCgacCGCCCGccgggcccgacccccGCGGCgGCUGg -3'
miRNA:   3'- -ACUGCCGCGa--GCGGGC---------------CGUCGaCGAC- -5'
21718 3' -63.1 NC_004812.1 + 82714 0.76 0.13681
Target:  5'- cGACGGCgGCUCGCCCgagcccagcagGGCGGCaacggccgGCUGa -3'
miRNA:   3'- aCUGCCG-CGAGCGGG-----------CCGUCGa-------CGAC- -5'
21718 3' -63.1 NC_004812.1 + 56128 0.76 0.145194
Target:  5'- gGugGGCGCggUCGCCCGacgccagccagaaccGCAGCUcGCUGa -3'
miRNA:   3'- aCugCCGCG--AGCGGGC---------------CGUCGA-CGAC- -5'
21718 3' -63.1 NC_004812.1 + 148270 0.76 0.147362
Target:  5'- gGGCGGC-CgCGCCCGGCAGCgcgGCg- -3'
miRNA:   3'- aCUGCCGcGaGCGGGCCGUCGa--CGac -5'
21718 3' -63.1 NC_004812.1 + 115437 0.76 0.147362
Target:  5'- -cGCGGCGCcgagagCGCCUGGCGGCgcgccGCUGg -3'
miRNA:   3'- acUGCCGCGa-----GCGGGCCGUCGa----CGAC- -5'
21718 3' -63.1 NC_004812.1 + 117369 0.76 0.147362
Target:  5'- gGGCGGC-CgCGCCCGGCAGCgcgGCg- -3'
miRNA:   3'- aCUGCCGcGaGCGGGCCGUCGa--CGac -5'
21718 3' -63.1 NC_004812.1 + 60474 0.76 0.147362
Target:  5'- aGGCGGCGCggUCGCCCGgGUAGUaGUUGg -3'
miRNA:   3'- aCUGCCGCG--AGCGGGC-CGUCGaCGAC- -5'
21718 3' -63.1 NC_004812.1 + 109467 0.76 0.148824
Target:  5'- cGGgGGCGCccgcgggcugcggcaUCGUgCGGCGGCUGCUGc -3'
miRNA:   3'- aCUgCCGCG---------------AGCGgGCCGUCGACGAC- -5'
21718 3' -63.1 NC_004812.1 + 129762 0.75 0.162585
Target:  5'- cGGCGGCGCcCGCCgCGGCGGCguucucGCg- -3'
miRNA:   3'- aCUGCCGCGaGCGG-GCCGUCGa-----CGac -5'
21718 3' -63.1 NC_004812.1 + 4254 0.75 0.162585
Target:  5'- cGGCGGCGCcCGCCgCGGCGGCguucucGCg- -3'
miRNA:   3'- aCUGCCGCGaGCGG-GCCGUCGa-----CGac -5'
21718 3' -63.1 NC_004812.1 + 108048 0.75 0.166606
Target:  5'- gUGACGGCGCuguUCGCgaCGGaCGGCUGCg- -3'
miRNA:   3'- -ACUGCCGCG---AGCGg-GCC-GUCGACGac -5'
21718 3' -63.1 NC_004812.1 + 74702 0.74 0.183594
Target:  5'- cGAUcGCGUUCGCCCuGCGGgUGCUGg -3'
miRNA:   3'- aCUGcCGCGAGCGGGcCGUCgACGAC- -5'
21718 3' -63.1 NC_004812.1 + 119198 0.74 0.188074
Target:  5'- gUGAUGGUGCccgccuucUCGCgCGGCcGCUGCUGc -3'
miRNA:   3'- -ACUGCCGCG--------AGCGgGCCGuCGACGAC- -5'
21718 3' -63.1 NC_004812.1 + 53146 0.74 0.188074
Target:  5'- aGACGGCGC--GCCUGGCGcGCgUGCUGu -3'
miRNA:   3'- aCUGCCGCGagCGGGCCGU-CG-ACGAC- -5'
21718 3' -63.1 NC_004812.1 + 59608 0.73 0.222194
Target:  5'- gGGCGGCGCUCGCgaaCCGGgGGUgGCg- -3'
miRNA:   3'- aCUGCCGCGAGCG---GGCCgUCGaCGac -5'
21718 3' -63.1 NC_004812.1 + 79444 0.73 0.232867
Target:  5'- gGACGGCGC-CGCCgCgGGCGgGCUGCc- -3'
miRNA:   3'- aCUGCCGCGaGCGG-G-CCGU-CGACGac -5'
21718 3' -63.1 NC_004812.1 + 49467 0.73 0.232867
Target:  5'- aGGCGGCGCugguUCGCCUGaCGGC-GCUGg -3'
miRNA:   3'- aCUGCCGCG----AGCGGGCcGUCGaCGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.