miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21719 3' -61.8 NC_004812.1 + 138365 0.66 0.628035
Target:  5'- -cGGuUCCgcgggacGGgCGGGGGCgCGUACGCc -3'
miRNA:   3'- cuCC-AGGa------CCgGCCCCUGgGCAUGUG- -5'
21719 3' -61.8 NC_004812.1 + 80702 0.66 0.675164
Target:  5'- gGGGGUCC-GGcCCGGGGAagggacgaaacgCCGagGCGCg -3'
miRNA:   3'- -CUCCAGGaCC-GGCCCCUg-----------GGCa-UGUG- -5'
21719 3' -61.8 NC_004812.1 + 155013 0.66 0.647709
Target:  5'- cGGGGcgCCcGGaggCGGGGAgCCGUGCGg -3'
miRNA:   3'- -CUCCa-GGaCCg--GCCCCUgGGCAUGUg -5'
21719 3' -61.8 NC_004812.1 + 117486 0.66 0.628035
Target:  5'- cGAGG-CCUGGCuCGuGGACCUGaccaccgcgACGCg -3'
miRNA:   3'- -CUCCaGGACCG-GCcCCUGGGCa--------UGUG- -5'
21719 3' -61.8 NC_004812.1 + 145965 0.66 0.686862
Target:  5'- cGGGGcacCCUcgGGCUGGGGGCCgugcUGUGCGg -3'
miRNA:   3'- -CUCCa--GGA--CCGGCCCCUGG----GCAUGUg -5'
21719 3' -61.8 NC_004812.1 + 27901 0.66 0.686862
Target:  5'- cGGGGcgagCCcGGUCGGGGAgaCCGgGCGCc -3'
miRNA:   3'- -CUCCa---GGaCCGGCCCCUg-GGCaUGUG- -5'
21719 3' -61.8 NC_004812.1 + 63769 0.66 0.647709
Target:  5'- cAGGUCCacgcgacucaGGCCGGGGuacugGCCgGcGCGCa -3'
miRNA:   3'- cUCCAGGa---------CCGGCCCC-----UGGgCaUGUG- -5'
21719 3' -61.8 NC_004812.1 + 95981 0.66 0.677117
Target:  5'- aGGGGcuguaccUCUGGauCCGGGGGCCCGccgaGCGCc -3'
miRNA:   3'- -CUCCa------GGACC--GGCCCCUGGGCa---UGUG- -5'
21719 3' -61.8 NC_004812.1 + 101921 0.66 0.628035
Target:  5'- -cGGUCg-GGCCucGGGGcCCCGgACGCg -3'
miRNA:   3'- cuCCAGgaCCGG--CCCCuGGGCaUGUG- -5'
21719 3' -61.8 NC_004812.1 + 98181 0.66 0.686862
Target:  5'- -cGGcgaUCCUGGCCGGGu-CCCGc-CGCc -3'
miRNA:   3'- cuCC---AGGACCGGCCCcuGGGCauGUG- -5'
21719 3' -61.8 NC_004812.1 + 5635 0.66 0.647709
Target:  5'- cGGGGgCCgGGcCCGGGGuCgCCGgGCGCg -3'
miRNA:   3'- -CUCCaGGaCC-GGCCCCuG-GGCaUGUG- -5'
21719 3' -61.8 NC_004812.1 + 48482 0.66 0.686862
Target:  5'- -cGG-CCgcgcGGCCGGGGGCUCGaccgGCGu -3'
miRNA:   3'- cuCCaGGa---CCGGCCCCUGGGCa---UGUg -5'
21719 3' -61.8 NC_004812.1 + 131108 0.66 0.681019
Target:  5'- cGGGGUCCUgcgaGGCCGcgucguaguagaaccGGGGCCgCG-GCAUg -3'
miRNA:   3'- -CUCCAGGA----CCGGC---------------CCCUGG-GCaUGUG- -5'
21719 3' -61.8 NC_004812.1 + 36536 0.66 0.647709
Target:  5'- cGGGGgCCgGGcCCGGGGuCgCCGgGCGCg -3'
miRNA:   3'- -CUCCaGGaCC-GGCCCCuG-GGCaUGUG- -5'
21719 3' -61.8 NC_004812.1 + 33826 0.66 0.627051
Target:  5'- cAGGUCCUGGCCcuccaccccGGGGugUuccgcagCGUcCGCg -3'
miRNA:   3'- cUCCAGGACCGG---------CCCCugG-------GCAuGUG- -5'
21719 3' -61.8 NC_004812.1 + 101188 0.66 0.667338
Target:  5'- cGGGUCCggucugcggGGCCaGGGGCCC---CGCg -3'
miRNA:   3'- cUCCAGGa--------CCGGcCCCUGGGcauGUG- -5'
21719 3' -61.8 NC_004812.1 + 6148 0.66 0.667338
Target:  5'- cGAGGggaagggGGUCGGGGGCCUGgGCGg -3'
miRNA:   3'- -CUCCagga---CCGGCCCCUGGGCaUGUg -5'
21719 3' -61.8 NC_004812.1 + 29505 0.66 0.647709
Target:  5'- cGGGGcgCCcGGaggCGGGGAgCCGUGCGg -3'
miRNA:   3'- -CUCCa-GGaCCg--GCCCCUgGGCAUGUg -5'
21719 3' -61.8 NC_004812.1 + 81440 0.66 0.63689
Target:  5'- cGGGGcCCagGGCCccaggcgaucGGGGGCCuccccgacgacggCGUACACg -3'
miRNA:   3'- -CUCCaGGa-CCGG----------CCCCUGG-------------GCAUGUG- -5'
21719 3' -61.8 NC_004812.1 + 81233 0.66 0.647709
Target:  5'- cGAGGacgcCCUGGCCgcgugcgucGGGGcGCUCGaGCGCg -3'
miRNA:   3'- -CUCCa---GGACCGG---------CCCC-UGGGCaUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.