Results 1 - 20 of 139 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21719 | 3' | -61.8 | NC_004812.1 | + | 65562 | 0.69 | 0.475149 |
Target: 5'- -cGGagCUGGCCGaGGACCCuggGCACg -3' miRNA: 3'- cuCCagGACCGGCcCCUGGGca-UGUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 108383 | 0.7 | 0.405753 |
Target: 5'- gGAGGcCCUgGGCCGcGGGGCuCCGcucGCGCc -3' miRNA: 3'- -CUCCaGGA-CCGGC-CCCUG-GGCa--UGUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 156018 | 0.7 | 0.405753 |
Target: 5'- gGAGGggacgCCcggGGCCGGGGGCCgCGc-CGCg -3' miRNA: 3'- -CUCCa----GGa--CCGGCCCCUGG-GCauGUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 23682 | 0.7 | 0.414079 |
Target: 5'- -uGGUgaUGGCCGGGGuCCgcugCGUGCGCg -3' miRNA: 3'- cuCCAggACCGGCCCCuGG----GCAUGUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 59010 | 0.7 | 0.414079 |
Target: 5'- aGGGUCUUGGCCGGcaGGAaCCCGUu--- -3' miRNA: 3'- cUCCAGGACCGGCC--CCU-GGGCAugug -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 1925 | 0.7 | 0.439672 |
Target: 5'- cGAGGcUCC-GGCCGGGGcgcuccGCCCGU-CGg -3' miRNA: 3'- -CUCC-AGGaCCGGCCCC------UGGGCAuGUg -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 33939 | 0.7 | 0.448401 |
Target: 5'- -cGGcUCCUGGCCucgggGGGGGCCgGgguCGCg -3' miRNA: 3'- cuCC-AGGACCGG-----CCCCUGGgCau-GUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 97975 | 0.7 | 0.448401 |
Target: 5'- -cGGUCCUGgGgCGGuGGGCCgGgagGCACg -3' miRNA: 3'- cuCCAGGAC-CgGCC-CCUGGgCa--UGUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 858 | 0.69 | 0.475149 |
Target: 5'- nGGGGUCCUGGgggucCUGGGGGUCCGggguCGCc -3' miRNA: 3'- -CUCCAGGACC-----GGCCCCUGGGCau--GUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 136472 | 0.71 | 0.381421 |
Target: 5'- cGAGcUCCcGGCCGGGG-CCCGgucCGCu -3' miRNA: 3'- -CUCcAGGaCCGGCCCCuGGGCau-GUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 73111 | 0.71 | 0.376672 |
Target: 5'- cAGGUCCauaacggucacgcgGGCCGcGGGAUCCG-GCGCg -3' miRNA: 3'- cUCCAGGa-------------CCGGC-CCCUGGGCaUGUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 39852 | 0.71 | 0.365749 |
Target: 5'- -cGGUgCggggGGCCGGGGGCuCCGccaugGCGCg -3' miRNA: 3'- cuCCAgGa---CCGGCCCCUG-GGCa----UGUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 8194 | 0.82 | 0.078912 |
Target: 5'- cGGGGUCCggccgagagcGGCCGGGGGCCCGcgucggACGCg -3' miRNA: 3'- -CUCCAGGa---------CCGGCCCCUGGGCa-----UGUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 4969 | 0.74 | 0.262755 |
Target: 5'- -cGGUCCUGuguucucugcGCgCGGGGGgCCGUGCGCc -3' miRNA: 3'- cuCCAGGAC----------CG-GCCCCUgGGCAUGUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 46658 | 0.73 | 0.268822 |
Target: 5'- uGGGGUCCgUGGCCGGGGGgcagcuccgcUCCGauaugagGCGCg -3' miRNA: 3'- -CUCCAGG-ACCGGCCCCU----------GGGCa------UGUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 49742 | 0.72 | 0.328549 |
Target: 5'- cGGGGUCggGGUcgcggCGGGGGCCCGgaaACGCa -3' miRNA: 3'- -CUCCAGgaCCG-----GCCCCUGGGCa--UGUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 151549 | 0.72 | 0.33576 |
Target: 5'- cGGGG-CCggGGCCGGGGGCgCG-GCGCc -3' miRNA: 3'- -CUCCaGGa-CCGGCCCCUGgGCaUGUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 17118 | 0.72 | 0.343086 |
Target: 5'- cGucGUCUUGGCCaGGGaaGACCaCGUGCACa -3' miRNA: 3'- -CucCAGGACCGG-CCC--CUGG-GCAUGUG- -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 833 | 0.71 | 0.358081 |
Target: 5'- gGGGGUCCggggUGGCCGGGGGuCCUGg---- -3' miRNA: 3'- -CUCCAGG----ACCGGCCCCU-GGGCaugug -5' |
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21719 | 3' | -61.8 | NC_004812.1 | + | 996 | 0.71 | 0.365749 |
Target: 5'- cGGGGUCCUGGggguCCGGGGucGCCCccaUugACg -3' miRNA: 3'- -CUCCAGGACC----GGCCCC--UGGGc--AugUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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