miRNA display CGI


Results 1 - 20 of 139 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21719 3' -61.8 NC_004812.1 + 510 0.68 0.540389
Target:  5'- -cGG-CCgccgcGGCCGGGGcggGCCCGcGCGCc -3'
miRNA:   3'- cuCCaGGa----CCGGCCCC---UGGGCaUGUG- -5'
21719 3' -61.8 NC_004812.1 + 833 0.71 0.358081
Target:  5'- gGGGGUCCggggUGGCCGGGGGuCCUGg---- -3'
miRNA:   3'- -CUCCAGG----ACCGGCCCCU-GGGCaugug -5'
21719 3' -61.8 NC_004812.1 + 858 0.69 0.475149
Target:  5'- nGGGGUCCUGGgggucCUGGGGGUCCGggguCGCc -3'
miRNA:   3'- -CUCCAGGACC-----GGCCCCUGGGCau--GUG- -5'
21719 3' -61.8 NC_004812.1 + 893 0.67 0.607389
Target:  5'- gGGGGUCCUGgggguccggggucGCCGGGGGuCCUGg---- -3'
miRNA:   3'- -CUCCAGGAC-------------CGGCCCCU-GGGCaugug -5'
21719 3' -61.8 NC_004812.1 + 945 0.67 0.607389
Target:  5'- gGGGGUCCUGgggguccggggucGCCGGGGGuCCUGg---- -3'
miRNA:   3'- -CUCCAGGAC-------------CGGCCCCU-GGGCaugug -5'
21719 3' -61.8 NC_004812.1 + 996 0.71 0.365749
Target:  5'- cGGGGUCCUGGggguCCGGGGucGCCCccaUugACg -3'
miRNA:   3'- -CUCCAGGACC----GGCCCC--UGGGc--AugUG- -5'
21719 3' -61.8 NC_004812.1 + 1925 0.7 0.439672
Target:  5'- cGAGGcUCC-GGCCGGGGcgcuccGCCCGU-CGg -3'
miRNA:   3'- -CUCC-AGGaCCGGCCCC------UGGGCAuGUg -5'
21719 3' -61.8 NC_004812.1 + 4969 0.74 0.262755
Target:  5'- -cGGUCCUGuguucucugcGCgCGGGGGgCCGUGCGCc -3'
miRNA:   3'- cuCCAGGAC----------CG-GCCCCUgGGCAUGUG- -5'
21719 3' -61.8 NC_004812.1 + 5025 0.68 0.530862
Target:  5'- cGAGG-CCgacgaccccgGGCCGGGGGCgCGcgaggGCGCc -3'
miRNA:   3'- -CUCCaGGa---------CCGGCCCCUGgGCa----UGUG- -5'
21719 3' -61.8 NC_004812.1 + 5089 0.68 0.560575
Target:  5'- cGGGGUCC-GGCCGGGGAggcgggggagUCUGggguccggggggcggGCGCg -3'
miRNA:   3'- -CUCCAGGaCCGGCCCCU----------GGGCa--------------UGUG- -5'
21719 3' -61.8 NC_004812.1 + 5402 0.68 0.541345
Target:  5'- cGGGGUCUcccagggacgcggcgGGCCGGGGGCCCcccagagGgGCg -3'
miRNA:   3'- -CUCCAGGa--------------CCGGCCCCUGGGca-----UgUG- -5'
21719 3' -61.8 NC_004812.1 + 5600 0.66 0.681019
Target:  5'- cGGGGUCCUgcgaGGCCGcgucguaguagaaccGGGGCCgCG-GCAUg -3'
miRNA:   3'- -CUCCAGGA----CCGGC---------------CCCUGG-GCaUGUG- -5'
21719 3' -61.8 NC_004812.1 + 5635 0.66 0.647709
Target:  5'- cGGGGgCCgGGcCCGGGGuCgCCGgGCGCg -3'
miRNA:   3'- -CUCCaGGaCC-GGCCCCuG-GGCaUGUG- -5'
21719 3' -61.8 NC_004812.1 + 6148 0.66 0.667338
Target:  5'- cGAGGggaagggGGUCGGGGGCCUGgGCGg -3'
miRNA:   3'- -CUCCagga---CCGGCCCCUGGGCaUGUg -5'
21719 3' -61.8 NC_004812.1 + 7738 0.68 0.51857
Target:  5'- cGGG-CgaGGCCGGGGGcgcccgccucccccCCCGUGCGu -3'
miRNA:   3'- cUCCaGgaCCGGCCCCU--------------GGGCAUGUg -5'
21719 3' -61.8 NC_004812.1 + 8194 0.82 0.078912
Target:  5'- cGGGGUCCggccgagagcGGCCGGGGGCCCGcgucggACGCg -3'
miRNA:   3'- -CUCCAGGa---------CCGGCCCCUGGGCa-----UGUG- -5'
21719 3' -61.8 NC_004812.1 + 8241 0.68 0.511997
Target:  5'- -cGG-CCgGGCCGGGGGuccgccCCCGgggGCGCc -3'
miRNA:   3'- cuCCaGGaCCGGCCCCU------GGGCa--UGUG- -5'
21719 3' -61.8 NC_004812.1 + 8390 0.68 0.540389
Target:  5'- cGGGGUCCgggGGCgcggCGGGGGCUCGgcCcCg -3'
miRNA:   3'- -CUCCAGGa--CCG----GCCCCUGGGCauGuG- -5'
21719 3' -61.8 NC_004812.1 + 11310 0.7 0.439672
Target:  5'- cGGGGcgCCgcgGGgCGGGGGCCgGUGgGCu -3'
miRNA:   3'- -CUCCa-GGa--CCgGCCCCUGGgCAUgUG- -5'
21719 3' -61.8 NC_004812.1 + 11656 0.67 0.618198
Target:  5'- cGGGGagcggcgCCUcGGCCucuccccccgGGGGGCuuCCGUACACg -3'
miRNA:   3'- -CUCCa------GGA-CCGG----------CCCCUG--GGCAUGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.