miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21719 3' -61.8 NC_004812.1 + 137554 1.09 0.000848
Target:  5'- cGAGGUCCUGGCCGGGGACCCGUACACg -3'
miRNA:   3'- -CUCCAGGACCGGCCCCUGGGCAUGUG- -5'
21719 3' -61.8 NC_004812.1 + 8194 0.82 0.078912
Target:  5'- cGGGGUCCggccgagagcGGCCGGGGGCCCGcgucggACGCg -3'
miRNA:   3'- -CUCCAGGa---------CCGGCCCCUGGGCa-----UGUG- -5'
21719 3' -61.8 NC_004812.1 + 39095 0.82 0.078912
Target:  5'- cGGGGUCCggccgagagcGGCCGGGGGCCCGcgucggACGCg -3'
miRNA:   3'- -CUCCAGGa---------CCGGCCCCUGGGCa-----UGUG- -5'
21719 3' -61.8 NC_004812.1 + 35870 0.79 0.109864
Target:  5'- -cGGUCCUGuguucucugcgcGCCGGGGGgCCGUGCGCc -3'
miRNA:   3'- cuCCAGGAC------------CGGCCCCUgGGCAUGUG- -5'
21719 3' -61.8 NC_004812.1 + 120370 0.75 0.218166
Target:  5'- cGGGGgcgcgcGGCCGGGGGCgCGUACGCg -3'
miRNA:   3'- -CUCCagga--CCGGCCCCUGgGCAUGUG- -5'
21719 3' -61.8 NC_004812.1 + 91159 0.74 0.239596
Target:  5'- -cGGUCCgggGGCCGGGGGgaccccucCCCGagggACGCg -3'
miRNA:   3'- cuCCAGGa--CCGGCCCCU--------GGGCa---UGUG- -5'
21719 3' -61.8 NC_004812.1 + 105284 0.74 0.250955
Target:  5'- cGAGGgcgggCCUGGCCuGGGcguagggcuGCCCGUACGg -3'
miRNA:   3'- -CUCCa----GGACCGGcCCC---------UGGGCAUGUg -5'
21719 3' -61.8 NC_004812.1 + 87889 0.74 0.256799
Target:  5'- -cGGUCCUcggGGCCGGGGGgcuuuauauccuCCgCGUACGCc -3'
miRNA:   3'- cuCCAGGA---CCGGCCCCU------------GG-GCAUGUG- -5'
21719 3' -61.8 NC_004812.1 + 4969 0.74 0.262755
Target:  5'- -cGGUCCUGuguucucugcGCgCGGGGGgCCGUGCGCc -3'
miRNA:   3'- cuCCAGGAC----------CG-GCCCCUgGGCAUGUG- -5'
21719 3' -61.8 NC_004812.1 + 46658 0.73 0.268822
Target:  5'- uGGGGUCCgUGGCCGGGGGgcagcuccgcUCCGauaugagGCGCg -3'
miRNA:   3'- -CUCCAGG-ACCGGCCCCU----------GGGCa------UGUG- -5'
21719 3' -61.8 NC_004812.1 + 69962 0.72 0.321453
Target:  5'- gGGGGUCUgUGGCCGGGGGCuCUGguggAgACg -3'
miRNA:   3'- -CUCCAGG-ACCGGCCCCUG-GGCa---UgUG- -5'
21719 3' -61.8 NC_004812.1 + 49742 0.72 0.328549
Target:  5'- cGGGGUCggGGUcgcggCGGGGGCCCGgaaACGCa -3'
miRNA:   3'- -CUCCAGgaCCG-----GCCCCUGGGCa--UGUG- -5'
21719 3' -61.8 NC_004812.1 + 26040 0.72 0.33576
Target:  5'- cGGGG-CCggGGCCGGGGGCgCG-GCGCc -3'
miRNA:   3'- -CUCCaGGa-CCGGCCCCUGgGCaUGUG- -5'
21719 3' -61.8 NC_004812.1 + 151549 0.72 0.33576
Target:  5'- cGGGG-CCggGGCCGGGGGCgCG-GCGCc -3'
miRNA:   3'- -CUCCaGGa-CCGGCCCCUGgGCaUGUG- -5'
21719 3' -61.8 NC_004812.1 + 17118 0.72 0.343086
Target:  5'- cGucGUCUUGGCCaGGGaaGACCaCGUGCACa -3'
miRNA:   3'- -CucCAGGACCGG-CCC--CUGG-GCAUGUG- -5'
21719 3' -61.8 NC_004812.1 + 31734 0.71 0.358081
Target:  5'- gGGGGUCCggggUGGCCGGGGGuCCUGg---- -3'
miRNA:   3'- -CUCCAGG----ACCGGCCCCU-GGGCaugug -5'
21719 3' -61.8 NC_004812.1 + 57409 0.71 0.358081
Target:  5'- -cGGcaCCUGGaCCGGGGGCCgGgcgGCACc -3'
miRNA:   3'- cuCCa-GGACC-GGCCCCUGGgCa--UGUG- -5'
21719 3' -61.8 NC_004812.1 + 833 0.71 0.358081
Target:  5'- gGGGGUCCggggUGGCCGGGGGuCCUGg---- -3'
miRNA:   3'- -CUCCAGG----ACCGGCCCCU-GGGCaugug -5'
21719 3' -61.8 NC_004812.1 + 39852 0.71 0.365749
Target:  5'- -cGGUgCggggGGCCGGGGGCuCCGccaugGCGCg -3'
miRNA:   3'- cuCCAgGa---CCGGCCCCUG-GGCa----UGUG- -5'
21719 3' -61.8 NC_004812.1 + 996 0.71 0.365749
Target:  5'- cGGGGUCCUGGggguCCGGGGucGCCCccaUugACg -3'
miRNA:   3'- -CUCCAGGACC----GGCCCC--UGGGc--AugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.