miRNA display CGI


Results 1 - 20 of 240 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21720 5' -55.8 NC_004812.1 + 114907 0.65 0.939421
Target:  5'- uGGUGCGCaGcgaggugagguacUGGGCGAGgcacucgUCgacgaccucggcguCCGCGGCg -3'
miRNA:   3'- -CCACGUG-C-------------ACCUGCUCa------AG--------------GGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 71376 0.66 0.921084
Target:  5'- aGUGgGCGUGGggacgggcgagGCGGGgg-UCGCAGCg -3'
miRNA:   3'- cCACgUGCACC-----------UGCUCaagGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 127950 0.66 0.931645
Target:  5'- --gGCGCG-GuGCGAGUgcgccUCgCCGCGGCg -3'
miRNA:   3'- ccaCGUGCaCcUGCUCA-----AG-GGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 51540 0.66 0.931645
Target:  5'- cGGcGC-CGggGGGCcAGUgugcgCCCGCGGCc -3'
miRNA:   3'- -CCaCGuGCa-CCUGcUCAa----GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 16706 0.66 0.915452
Target:  5'- gGGUGCGCGagcgaccgcgGGGCcGG-UCCCGCucGCc -3'
miRNA:   3'- -CCACGUGCa---------CCUGcUCaAGGGCGu-CG- -5'
21720 5' -55.8 NC_004812.1 + 39366 0.66 0.92542
Target:  5'- cGGccUGCACGUugcGGGCcAGcugcugaauggCCCGCAGCu -3'
miRNA:   3'- -CC--ACGUGCA---CCUGcUCaa---------GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 45458 0.66 0.915452
Target:  5'- --cGC-CGgggGGGCGAGgagCCCgaGCGGCa -3'
miRNA:   3'- ccaCGuGCa--CCUGCUCaa-GGG--CGUCG- -5'
21720 5' -55.8 NC_004812.1 + 98583 0.66 0.928575
Target:  5'- --aGCACGagGGGCGcGUccgucaggucgucgcUCCCGUGGCc -3'
miRNA:   3'- ccaCGUGCa-CCUGCuCA---------------AGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 61331 0.66 0.915452
Target:  5'- cGGUGCGuuCGggaGGACGGGUg-CUGCGGa -3'
miRNA:   3'- -CCACGU--GCa--CCUGCUCAagGGCGUCg -5'
21720 5' -55.8 NC_004812.1 + 31745 0.66 0.926481
Target:  5'- --gGCGCG-GGGCGGGgg--CGCGGCg -3'
miRNA:   3'- ccaCGUGCaCCUGCUCaaggGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 142286 0.66 0.931645
Target:  5'- cGGaGCuCcUGGACGAGggCCCcgggccggcGCGGCg -3'
miRNA:   3'- -CCaCGuGcACCUGCUCaaGGG---------CGUCG- -5'
21720 5' -55.8 NC_004812.1 + 124321 0.66 0.921084
Target:  5'- aGGggGCGCGgcgcgGGGCGGGccgUCgCGCAcgGCg -3'
miRNA:   3'- -CCa-CGUGCa----CCUGCUCa--AGgGCGU--CG- -5'
21720 5' -55.8 NC_004812.1 + 104064 0.66 0.931645
Target:  5'- cGGUGCcggucggacgACGgggGGGCGAGUcCCCauCGGUg -3'
miRNA:   3'- -CCACG----------UGCa--CCUGCUCAaGGGc-GUCG- -5'
21720 5' -55.8 NC_004812.1 + 42821 0.66 0.931645
Target:  5'- cGGggGCugGUGGGCGcaacgaCCCGCAc- -3'
miRNA:   3'- -CCa-CGugCACCUGCucaa--GGGCGUcg -5'
21720 5' -55.8 NC_004812.1 + 7687 0.66 0.913135
Target:  5'- gGGUGgGCG-GGcGCGGGggucgcgccgagUCCGCGGCg -3'
miRNA:   3'- -CCACgUGCaCC-UGCUCaa----------GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 45216 0.66 0.931645
Target:  5'- --aGCGCGgccgcGGACGGGUUgCCGagaaacccccuCAGCu -3'
miRNA:   3'- ccaCGUGCa----CCUGCUCAAgGGC-----------GUCG- -5'
21720 5' -55.8 NC_004812.1 + 103999 0.66 0.926481
Target:  5'- -cUGCGCcUGGcUGAGgcggCCCGUGGCg -3'
miRNA:   3'- ccACGUGcACCuGCUCaa--GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 90596 0.66 0.915452
Target:  5'- --aGCugGUGGAgGAa--CCCgGCGGCg -3'
miRNA:   3'- ccaCGugCACCUgCUcaaGGG-CGUCG- -5'
21720 5' -55.8 NC_004812.1 + 108355 0.66 0.931645
Target:  5'- --aGCGCGcGGACGAcGUcgCCgCGCuGCa -3'
miRNA:   3'- ccaCGUGCaCCUGCU-CAa-GG-GCGuCG- -5'
21720 5' -55.8 NC_004812.1 + 72505 0.66 0.921634
Target:  5'- cGGgggGCGCGccgccgccgggguccGGGCcGGcgCCCGCGGCg -3'
miRNA:   3'- -CCa--CGUGCa--------------CCUGcUCaaGGGCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.