miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21720 5' -55.8 NC_004812.1 + 106668 0.7 0.730695
Target:  5'- --aGCGCGUGGA--GGUUCCgGcCGGCg -3'
miRNA:   3'- ccaCGUGCACCUgcUCAAGGgC-GUCG- -5'
21720 5' -55.8 NC_004812.1 + 12814 0.72 0.62064
Target:  5'- -cUGCGCGUGGACGG----CCGCGGUg -3'
miRNA:   3'- ccACGUGCACCUGCUcaagGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 4183 0.72 0.630761
Target:  5'- --cGcCACGUGGAcgcCGAGggcgccCCCGCGGCg -3'
miRNA:   3'- ccaC-GUGCACCU---GCUCaa----GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 113249 0.72 0.640884
Target:  5'- cGGaGCGCGUcaGCGAGagcuucgCCCGCAGCg -3'
miRNA:   3'- -CCaCGUGCAccUGCUCaa-----GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 155240 0.71 0.701193
Target:  5'- uGGUGCGCGaGGGCGGG--CCgagggggggCGCGGCg -3'
miRNA:   3'- -CCACGUGCaCCUGCUCaaGG---------GCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 44000 0.71 0.717006
Target:  5'- aGGUGCACaUGGcCGAGgccagcaggaggcUCCgGCGGCc -3'
miRNA:   3'- -CCACGUGcACCuGCUCa------------AGGgCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 30103 0.7 0.730695
Target:  5'- --aGUcgGCGUGGggcuGCGGGgcgcacgUCCCGCAGCc -3'
miRNA:   3'- ccaCG--UGCACC----UGCUCa------AGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 44370 0.7 0.730695
Target:  5'- cGUGCcCG-GGGCGcag-CCCGCGGCg -3'
miRNA:   3'- cCACGuGCaCCUGCucaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 92753 0.7 0.730695
Target:  5'- -cUGUACGagUGGcGCGGGccgCCCGCGGCg -3'
miRNA:   3'- ccACGUGC--ACC-UGCUCaa-GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 125563 0.73 0.610527
Target:  5'- gGGgggGCGCGUuuGGGCGGGcUCCCG-GGCg -3'
miRNA:   3'- -CCa--CGUGCA--CCUGCUCaAGGGCgUCG- -5'
21720 5' -55.8 NC_004812.1 + 105444 0.73 0.610527
Target:  5'- cGGUGCGCGgGGAgGGGgUCgCGgAGCg -3'
miRNA:   3'- -CCACGUGCaCCUgCUCaAGgGCgUCG- -5'
21720 5' -55.8 NC_004812.1 + 155739 0.73 0.60043
Target:  5'- gGGcGCGCGcGGGCGGGg-CUCGCGGCc -3'
miRNA:   3'- -CCaCGUGCaCCUGCUCaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 37163 0.75 0.464238
Target:  5'- uGGUGCGCucggccgcguuGUGcGCGAGgaCCUGCAGCg -3'
miRNA:   3'- -CCACGUG-----------CACcUGCUCaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 74437 0.75 0.492253
Target:  5'- cGGUGU---UGGACGAGggCCCGCGcGCc -3'
miRNA:   3'- -CCACGugcACCUGCUCaaGGGCGU-CG- -5'
21720 5' -55.8 NC_004812.1 + 55532 0.74 0.560338
Target:  5'- --cGC-CGUGGACGcugaCCCGCAGCa -3'
miRNA:   3'- ccaCGuGCACCUGCucaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 87902 0.74 0.560338
Target:  5'- cGUGCugGcGGGCGAGgagUCGCGGCg -3'
miRNA:   3'- cCACGugCaCCUGCUCaagGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 41579 0.74 0.560338
Target:  5'- cGUGCAgccCGUGGGCGAgcacgaaguGUUCCuCGaCAGCg -3'
miRNA:   3'- cCACGU---GCACCUGCU---------CAAGG-GC-GUCG- -5'
21720 5' -55.8 NC_004812.1 + 73530 0.73 0.570303
Target:  5'- cGGUgGC-CGgGGGCGGG--CCCGCAGCg -3'
miRNA:   3'- -CCA-CGuGCaCCUGCUCaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 45625 0.73 0.570303
Target:  5'- uGG-GCGCGgGGACGGccgcgcugCCCGCGGCg -3'
miRNA:   3'- -CCaCGUGCaCCUGCUcaa-----GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 80626 0.73 0.590356
Target:  5'- gGGUcCGCGguggagagGGGCGGGgagUCCgGCAGCg -3'
miRNA:   3'- -CCAcGUGCa-------CCUGCUCa--AGGgCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.