miRNA display CGI


Results 1 - 20 of 240 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21720 5' -55.8 NC_004812.1 + 54 0.73 0.610527
Target:  5'- gGGgggGCGCGUuuGGGCGGGcUCCCG-GGCg -3'
miRNA:   3'- -CCa--CGUGCA--CCUGCUCaAGGGCgUCG- -5'
21720 5' -55.8 NC_004812.1 + 142 0.68 0.854632
Target:  5'- --cGCGCGUGGcgccGCGccgccGcgCCCGCGGCc -3'
miRNA:   3'- ccaCGUGCACC----UGCu----CaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 256 0.68 0.862247
Target:  5'- --cGCGCGggaggagGGGgGGGUcUCCCGCGcGCg -3'
miRNA:   3'- ccaCGUGCa------CCUgCUCA-AGGGCGU-CG- -5'
21720 5' -55.8 NC_004812.1 + 1979 0.7 0.747095
Target:  5'- aGGgGCugGUaucgaccgccauuuGGGgGAGUggaCCCGCGGCg -3'
miRNA:   3'- -CCaCGugCA--------------CCUgCUCAa--GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 2442 0.66 0.931645
Target:  5'- --gGCGCG-GuGCGAGUgcgccUCgCCGCGGCg -3'
miRNA:   3'- ccaCGUGCaCcUGCUCA-----AG-GGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 3871 0.7 0.740374
Target:  5'- --cGCGCGUGcGGCGcAGcUCgCGCAGCc -3'
miRNA:   3'- ccaCGUGCAC-CUGC-UCaAGgGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 3911 0.67 0.909589
Target:  5'- cGGcgGCGCG-GcGGCGGGgcCgCGCGGCg -3'
miRNA:   3'- -CCa-CGUGCaC-CUGCUCaaGgGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 4165 0.68 0.84682
Target:  5'- -cUGCGCG-GcGAUGAcg-CCCGCGGCg -3'
miRNA:   3'- ccACGUGCaC-CUGCUcaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 4183 0.72 0.630761
Target:  5'- --cGcCACGUGGAcgcCGAGggcgccCCCGCGGCg -3'
miRNA:   3'- ccaC-GUGCACCU---GCUCaa----GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 4631 0.66 0.936575
Target:  5'- aGGgGCGgGgGGGCGGGacgCCCGC-GCg -3'
miRNA:   3'- -CCaCGUgCaCCUGCUCaa-GGGCGuCG- -5'
21720 5' -55.8 NC_004812.1 + 4715 0.68 0.854632
Target:  5'- --cGCGCGaGGACGGGgcgugugCCCGCucGCc -3'
miRNA:   3'- ccaCGUGCaCCUGCUCaa-----GGGCGu-CG- -5'
21720 5' -55.8 NC_004812.1 + 5939 0.67 0.903494
Target:  5'- cGGaGCGCGgGGGCGA---CCgGCGGCu -3'
miRNA:   3'- -CCaCGUGCaCCUGCUcaaGGgCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 7559 0.67 0.876862
Target:  5'- cGG-GCGCGggGGGCGG--UCCCGCccccaccgccGGCa -3'
miRNA:   3'- -CCaCGUGCa-CCUGCUcaAGGGCG----------UCG- -5'
21720 5' -55.8 NC_004812.1 + 7687 0.66 0.913135
Target:  5'- gGGUGgGCG-GGcGCGGGggucgcgccgagUCCGCGGCg -3'
miRNA:   3'- -CCACgUGCaCC-UGCUCaa----------GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 10222 0.69 0.822268
Target:  5'- --cGCACGgcugucUGGAaaAGUgggCCCGCGGCg -3'
miRNA:   3'- ccaCGUGC------ACCUgcUCAa--GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 11974 0.68 0.862247
Target:  5'- cGUGUcccGCGgGGGCGGGgUUCCGcCGGCg -3'
miRNA:   3'- cCACG---UGCaCCUGCUCaAGGGC-GUCG- -5'
21720 5' -55.8 NC_004812.1 + 12814 0.72 0.62064
Target:  5'- -cUGCGCGUGGACGG----CCGCGGUg -3'
miRNA:   3'- ccACGUGCACCUGCUcaagGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 13940 0.69 0.787205
Target:  5'- cGGUcUGCGUGGGCGAGc-CCaCGCAGa -3'
miRNA:   3'- -CCAcGUGCACCUGCUCaaGG-GCGUCg -5'
21720 5' -55.8 NC_004812.1 + 14937 0.68 0.866719
Target:  5'- cGG-GCGCGUGcauGACGAGgcccaggucgucgUCCuCGUGGCg -3'
miRNA:   3'- -CCaCGUGCAC---CUGCUCa------------AGG-GCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 15959 0.68 0.869658
Target:  5'- aGGcgGCGCGUGG-CGccg-CCgCGCGGCg -3'
miRNA:   3'- -CCa-CGUGCACCuGCucaaGG-GCGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.