miRNA display CGI


Results 1 - 20 of 240 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21720 5' -55.8 NC_004812.1 + 137718 1.03 0.008493
Target:  5'- aGGUGCA-GUGGACGAGUUCCCGCAGCg -3'
miRNA:   3'- -CCACGUgCACCUGCUCAAGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 82350 0.79 0.288693
Target:  5'- cGGUGCGCGgccgGGGCGAGgcguaCCUGCGGg -3'
miRNA:   3'- -CCACGUGCa---CCUGCUCaa---GGGCGUCg -5'
21720 5' -55.8 NC_004812.1 + 43967 0.77 0.393925
Target:  5'- --cGCugGUGGAgucCGAGUcCCCGCGGUc -3'
miRNA:   3'- ccaCGugCACCU---GCUCAaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 37163 0.75 0.464238
Target:  5'- uGGUGCGCucggccgcguuGUGcGCGAGgaCCUGCAGCg -3'
miRNA:   3'- -CCACGUG-----------CACcUGCUCaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 82149 0.75 0.473486
Target:  5'- cGUGgGCgGUGGACGAGUUCC-GgGGCg -3'
miRNA:   3'- cCACgUG-CACCUGCUCAAGGgCgUCG- -5'
21720 5' -55.8 NC_004812.1 + 74437 0.75 0.492253
Target:  5'- cGGUGU---UGGACGAGggCCCGCGcGCc -3'
miRNA:   3'- -CCACGugcACCUGCUCaaGGGCGU-CG- -5'
21720 5' -55.8 NC_004812.1 + 62008 0.75 0.501764
Target:  5'- cGGUGCGCG-GGAC-AGg--CCGCGGCg -3'
miRNA:   3'- -CCACGUGCaCCUGcUCaagGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 76942 0.74 0.511355
Target:  5'- aGGUGgGCGgGGGCGAugguguuuuucGUUCCCGCcgGGCc -3'
miRNA:   3'- -CCACgUGCaCCUGCU-----------CAAGGGCG--UCG- -5'
21720 5' -55.8 NC_004812.1 + 122325 0.74 0.521021
Target:  5'- uGGUGCGCGUGGG-GGGUggCCGCcaGGUa -3'
miRNA:   3'- -CCACGUGCACCUgCUCAagGGCG--UCG- -5'
21720 5' -55.8 NC_004812.1 + 109218 0.74 0.530757
Target:  5'- cGGUGCcccgGCG-GGGCGAGggCCUGCAcgaGCu -3'
miRNA:   3'- -CCACG----UGCaCCUGCUCaaGGGCGU---CG- -5'
21720 5' -55.8 NC_004812.1 + 85662 0.74 0.549432
Target:  5'- uGGUGC-CG-GGGCGGGUUgcgguccCCCGaCGGCa -3'
miRNA:   3'- -CCACGuGCaCCUGCUCAA-------GGGC-GUCG- -5'
21720 5' -55.8 NC_004812.1 + 55532 0.74 0.560338
Target:  5'- --cGC-CGUGGACGcugaCCCGCAGCa -3'
miRNA:   3'- ccaCGuGCACCUGCucaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 87902 0.74 0.560338
Target:  5'- cGUGCugGcGGGCGAGgagUCGCGGCg -3'
miRNA:   3'- cCACGugCaCCUGCUCaagGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 41579 0.74 0.560338
Target:  5'- cGUGCAgccCGUGGGCGAgcacgaaguGUUCCuCGaCAGCg -3'
miRNA:   3'- cCACGU---GCACCUGCU---------CAAGG-GC-GUCG- -5'
21720 5' -55.8 NC_004812.1 + 45625 0.73 0.570303
Target:  5'- uGG-GCGCGgGGACGGccgcgcugCCCGCGGCg -3'
miRNA:   3'- -CCaCGUGCaCCUGCUcaa-----GGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 73530 0.73 0.570303
Target:  5'- cGGUgGC-CGgGGGCGGG--CCCGCAGCg -3'
miRNA:   3'- -CCA-CGuGCaCCUGCUCaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 80626 0.73 0.590356
Target:  5'- gGGUcCGCGguggagagGGGCGGGgagUCCgGCAGCg -3'
miRNA:   3'- -CCAcGUGCa-------CCUGCUCa--AGGgCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 30231 0.73 0.60043
Target:  5'- gGGcGCGCGcGGGCGGGg-CUCGCGGCc -3'
miRNA:   3'- -CCaCGUGCaCCUGCUCaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 155739 0.73 0.60043
Target:  5'- gGGcGCGCGcGGGCGGGg-CUCGCGGCc -3'
miRNA:   3'- -CCaCGUGCaCCUGCUCaaGGGCGUCG- -5'
21720 5' -55.8 NC_004812.1 + 105444 0.73 0.610527
Target:  5'- cGGUGCGCGgGGAgGGGgUCgCGgAGCg -3'
miRNA:   3'- -CCACGUGCaCCUgCUCaAGgGCgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.