miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21721 3' -55.2 NC_004812.1 + 15403 0.66 0.95336
Target:  5'- cGUGGCCGGggccGUCGAgcgcgccgcccCGGGCcUCCgGg -3'
miRNA:   3'- cCACCGGCUa---CAGCU-----------GUCUGuAGGgC- -5'
21721 3' -55.2 NC_004812.1 + 68430 0.66 0.95336
Target:  5'- --cGGCCGA-GagGAgGGACGcCCCGg -3'
miRNA:   3'- ccaCCGGCUaCagCUgUCUGUaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 71970 0.66 0.95336
Target:  5'- uGGUGGCCGuc--UGGCGcGGCGUCgCCa -3'
miRNA:   3'- -CCACCGGCuacaGCUGU-CUGUAG-GGc -5'
21721 3' -55.2 NC_004812.1 + 75649 0.66 0.950958
Target:  5'- cGGcGGuCCGAgaggUGUUGGCGGACGUggacgaggacggcccCCCGc -3'
miRNA:   3'- -CCaCC-GGCU----ACAGCUGUCUGUA---------------GGGC- -5'
21721 3' -55.2 NC_004812.1 + 96204 0.66 0.949311
Target:  5'- cGUGGaCGcgGUCGcGCGGGCGgccgCCCa -3'
miRNA:   3'- cCACCgGCuaCAGC-UGUCUGUa---GGGc -5'
21721 3' -55.2 NC_004812.1 + 98903 0.66 0.949311
Target:  5'- aGG-GGCgCGGUGgcgCGGCAGAagcgcUCCUGg -3'
miRNA:   3'- -CCaCCG-GCUACa--GCUGUCUgu---AGGGC- -5'
21721 3' -55.2 NC_004812.1 + 139723 0.66 0.949311
Target:  5'- uGGUGGCUGAUGgccUCGGCcacgccGACcaggucgcgGUCCCc -3'
miRNA:   3'- -CCACCGGCUAC---AGCUGu-----CUG---------UAGGGc -5'
21721 3' -55.2 NC_004812.1 + 80468 0.66 0.949311
Target:  5'- aGGUGGUCGcgG-CGACGcGGCGgcgCgCCGa -3'
miRNA:   3'- -CCACCGGCuaCaGCUGU-CUGUa--G-GGC- -5'
21721 3' -55.2 NC_004812.1 + 155249 0.66 0.945035
Target:  5'- aGGgcgGGCCGAggggGggcgCGGCGGACGccaaaCCGg -3'
miRNA:   3'- -CCa--CCGGCUa---Ca---GCUGUCUGUag---GGC- -5'
21721 3' -55.2 NC_004812.1 + 29741 0.66 0.945035
Target:  5'- aGGgcgGGCCGAggggGggcgCGGCGGACGccaaaCCGg -3'
miRNA:   3'- -CCa--CCGGCUa---Ca---GCUGUCUGUag---GGC- -5'
21721 3' -55.2 NC_004812.1 + 140626 0.66 0.944594
Target:  5'- cGG-GGCCGcgggGUCGGCgccgccggccgcgGGGCGUCCgGu -3'
miRNA:   3'- -CCaCCGGCua--CAGCUG-------------UCUGUAGGgC- -5'
21721 3' -55.2 NC_004812.1 + 7801 0.66 0.942358
Target:  5'- --aGGCCGcggGagaagccuaccugucUCGGCGGGCGUCUCGg -3'
miRNA:   3'- ccaCCGGCua-C---------------AGCUGUCUGUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 134067 0.66 0.942358
Target:  5'- --gGGCCGGUGUCGuuucccgacgcggggGCGccGACGUCgCGg -3'
miRNA:   3'- ccaCCGGCUACAGC---------------UGU--CUGUAGgGC- -5'
21721 3' -55.2 NC_004812.1 + 38702 0.66 0.942358
Target:  5'- --aGGCCGcggGagaagccuaccugucUCGGCGGGCGUCUCGg -3'
miRNA:   3'- ccaCCGGCua-C---------------AGCUGUCUGUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 91986 0.66 0.940528
Target:  5'- --cGGCCGAUGguugUGACGGugG-CCgCGa -3'
miRNA:   3'- ccaCCGGCUACa---GCUGUCugUaGG-GC- -5'
21721 3' -55.2 NC_004812.1 + 68238 0.66 0.940528
Target:  5'- cGGgGGCCGggGccUCGGCcucGACGUCCuCGu -3'
miRNA:   3'- -CCaCCGGCuaC--AGCUGu--CUGUAGG-GC- -5'
21721 3' -55.2 NC_004812.1 + 50330 0.66 0.940528
Target:  5'- cGUGGCCcuGUGcgcgaUCGGCAGGCGcCUCGg -3'
miRNA:   3'- cCACCGGc-UAC-----AGCUGUCUGUaGGGC- -5'
21721 3' -55.2 NC_004812.1 + 842 0.66 0.940528
Target:  5'- gGGUGGCCGGggGUCcu--GGgGUCCUGg -3'
miRNA:   3'- -CCACCGGCUa-CAGcuguCUgUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 31743 0.66 0.940528
Target:  5'- gGGUGGCCGGggGUCcu--GGgGUCCUGg -3'
miRNA:   3'- -CCACCGGCUa-CAGcuguCUgUAGGGC- -5'
21721 3' -55.2 NC_004812.1 + 96433 0.66 0.940528
Target:  5'- -aUGGCCGucuuUGacgagccgcCGACGGACAUCgCCGc -3'
miRNA:   3'- ccACCGGCu---ACa--------GCUGUCUGUAG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.