miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21721 5' -56.6 NC_004812.1 + 154597 0.67 0.834585
Target:  5'- gACCGGAGCUUuauUCGCcgcgGGUCC-ACUCc -3'
miRNA:   3'- gUGGCCUUGGAc--AGCG----CCAGGaUGAG- -5'
21721 5' -56.6 NC_004812.1 + 153702 0.69 0.772215
Target:  5'- uCGCCGGcGCC-GUCGaguaccuCGG-CCUGCUCg -3'
miRNA:   3'- -GUGGCCuUGGaCAGC-------GCCaGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 153535 0.68 0.809182
Target:  5'- cCGCCuGGACCgacgcgCGCGGcggccucuccuUCCUGCUCg -3'
miRNA:   3'- -GUGGcCUUGGaca---GCGCC-----------AGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 151552 0.67 0.865894
Target:  5'- gGCCGGGGCCgGgggCGCGGcgCC--CUCg -3'
miRNA:   3'- gUGGCCUUGGaCa--GCGCCa-GGauGAG- -5'
21721 5' -56.6 NC_004812.1 + 149549 0.66 0.893906
Target:  5'- gCGCCuGGAGcggcCCUGgCGCGGUCC-ACa- -3'
miRNA:   3'- -GUGG-CCUU----GGACaGCGCCAGGaUGag -5'
21721 5' -56.6 NC_004812.1 + 149143 0.66 0.906578
Target:  5'- cCGCCGGGGCg---CGCGGUCCccGCg- -3'
miRNA:   3'- -GUGGCCUUGgacaGCGCCAGGa-UGag -5'
21721 5' -56.6 NC_004812.1 + 146859 0.72 0.604764
Target:  5'- gCGCCGcGGGCCUgGUgGCGGUCCc-CUCc -3'
miRNA:   3'- -GUGGC-CUUGGA-CAgCGCCAGGauGAG- -5'
21721 5' -56.6 NC_004812.1 + 141408 0.66 0.87322
Target:  5'- uGCUGGAgcgcGCCUGcCGCaGcGUCCUcCUCu -3'
miRNA:   3'- gUGGCCU----UGGACaGCG-C-CAGGAuGAG- -5'
21721 5' -56.6 NC_004812.1 + 140461 0.66 0.88723
Target:  5'- gCGCCGGAGCUcgaUGUCcCGGUCgcgcagCUGCgUCg -3'
miRNA:   3'- -GUGGCCUUGG---ACAGcGCCAG------GAUG-AG- -5'
21721 5' -56.6 NC_004812.1 + 139744 0.66 0.906578
Target:  5'- aCGCCG--ACCagGUCGCGGUCCcccGCg- -3'
miRNA:   3'- -GUGGCcuUGGa-CAGCGCCAGGa--UGag -5'
21721 5' -56.6 NC_004812.1 + 138301 1.08 0.003162
Target:  5'- gCACCGGAACCUGUCGCGGUCCUACUCc -3'
miRNA:   3'- -GUGGCCUUGGACAGCGCCAGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 133355 0.73 0.534814
Target:  5'- gGCCGuGGACCUGgCGCagguaGGUCCcGCUCa -3'
miRNA:   3'- gUGGC-CUUGGACaGCG-----CCAGGaUGAG- -5'
21721 5' -56.6 NC_004812.1 + 131189 0.67 0.865894
Target:  5'- -cCCGGGACCccccUGCGGUUCUACg- -3'
miRNA:   3'- guGGCCUUGGaca-GCGCCAGGAUGag -5'
21721 5' -56.6 NC_004812.1 + 125206 0.74 0.467925
Target:  5'- gGCgCGGcGCCUG-C-CGGUCCUGCUCg -3'
miRNA:   3'- gUG-GCCuUGGACaGcGCCAGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 123696 0.67 0.834585
Target:  5'- gACCGGAGCUUuauUCGCcgcgGGUCC-ACUCc -3'
miRNA:   3'- gUGGCCUUGGAc--AGCG----CCAGGaUGAG- -5'
21721 5' -56.6 NC_004812.1 + 118648 0.66 0.893906
Target:  5'- gCGCCuGGAGcggcCCUGgCGCGGUCC-ACa- -3'
miRNA:   3'- -GUGG-CCUU----GGACaGCGCCAGGaUGag -5'
21721 5' -56.6 NC_004812.1 + 116598 0.7 0.695707
Target:  5'- cCGCCGcGGGCCgccgcgucUGUCGCGG-CC-GCUCg -3'
miRNA:   3'- -GUGGC-CUUGG--------ACAGCGCCaGGaUGAG- -5'
21721 5' -56.6 NC_004812.1 + 116192 0.66 0.891927
Target:  5'- gCGCCGuGGcgggcuacuacgcgGCCUGgcucgcgcggGCGGUCCUGCUUu -3'
miRNA:   3'- -GUGGC-CU--------------UGGACag--------CGCCAGGAUGAG- -5'
21721 5' -56.6 NC_004812.1 + 115526 0.73 0.534814
Target:  5'- -cCCGGGACCUGg-GCGGUUCUAUg- -3'
miRNA:   3'- guGGCCUUGGACagCGCCAGGAUGag -5'
21721 5' -56.6 NC_004812.1 + 113453 0.66 0.88723
Target:  5'- -cCCGGGccGCCgcggUGUCGCGGacCCUGCg- -3'
miRNA:   3'- guGGCCU--UGG----ACAGCGCCa-GGAUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.