miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21722 5' -58.8 NC_004812.1 + 126982 0.65 0.840943
Target:  5'- gCCgGCGUCCUCGgcgggcggcggcgGAGCGCCggccggccCGCg- -3'
miRNA:   3'- -GGgUGCGGGAGCa------------CUUGCGGa-------GCGac -5'
21722 5' -58.8 NC_004812.1 + 1474 0.65 0.840943
Target:  5'- gCCgGCGUCCUCGgcgggcggcggcgGAGCGCCggccggccCGCg- -3'
miRNA:   3'- -GGgUGCGGGAGCa------------CUUGCGGa-------GCGac -5'
21722 5' -58.8 NC_004812.1 + 106536 0.66 0.819826
Target:  5'- gCgGCGCCUUCGUcacguACGCCggggaGCUGa -3'
miRNA:   3'- gGgUGCGGGAGCAcu---UGCGGag---CGAC- -5'
21722 5' -58.8 NC_004812.1 + 17275 0.66 0.828084
Target:  5'- gCCUcCGCCUUCGUGAaaaucucgGCGUggCUCGCc- -3'
miRNA:   3'- -GGGuGCGGGAGCACU--------UGCG--GAGCGac -5'
21722 5' -58.8 NC_004812.1 + 32042 0.66 0.802837
Target:  5'- cUCCAgGCCCgCGaUGAcCGCCUCGg-- -3'
miRNA:   3'- -GGGUgCGGGaGC-ACUuGCGGAGCgac -5'
21722 5' -58.8 NC_004812.1 + 4180 0.66 0.802837
Target:  5'- aCC-CGCCa-CGUGGACGCCgagggCGCc- -3'
miRNA:   3'- gGGuGCGGgaGCACUUGCGGa----GCGac -5'
21722 5' -58.8 NC_004812.1 + 39230 0.66 0.811408
Target:  5'- gCCCGgGCCaCgcgCGUGGccagGCGCC-CGUUGu -3'
miRNA:   3'- -GGGUgCGG-Ga--GCACU----UGCGGaGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 131165 0.66 0.818991
Target:  5'- cCCCGCGUCCgccggggggCGUcggaguccugcgcGAACGCCgCGCg- -3'
miRNA:   3'- -GGGUGCGGGa--------GCA-------------CUUGCGGaGCGac -5'
21722 5' -58.8 NC_004812.1 + 91116 0.66 0.802837
Target:  5'- cCCCuCGCCCcCGUGGuccGCGCg-CGCUc -3'
miRNA:   3'- -GGGuGCGGGaGCACU---UGCGgaGCGAc -5'
21722 5' -58.8 NC_004812.1 + 108606 0.66 0.802837
Target:  5'- aCCACGCuCUUCGUGcaccacgaGGCGCgCgUGCUGg -3'
miRNA:   3'- gGGUGCG-GGAGCAC--------UUGCG-GaGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 468 0.66 0.819826
Target:  5'- gCCgGCGCgCCUgCGUGcgcacGCGCCU-GCUGc -3'
miRNA:   3'- -GGgUGCG-GGA-GCACu----UGCGGAgCGAC- -5'
21722 5' -58.8 NC_004812.1 + 41830 0.66 0.819826
Target:  5'- -aCACGCCCUCcccguACGCCUuCGCc- -3'
miRNA:   3'- ggGUGCGGGAGcacu-UGCGGA-GCGac -5'
21722 5' -58.8 NC_004812.1 + 133151 0.66 0.819826
Target:  5'- gCCGCGCgCCUCGccGACGaCC-CGCUc -3'
miRNA:   3'- gGGUGCG-GGAGCacUUGC-GGaGCGAc -5'
21722 5' -58.8 NC_004812.1 + 4480 0.66 0.802837
Target:  5'- gCCCACGgCCUCuggaugaccccgGUGGGCGgCaUGCUGu -3'
miRNA:   3'- -GGGUGCgGGAG------------CACUUGCgGaGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 124418 0.66 0.802837
Target:  5'- gCCCucggacCGCCCUCG-GAcCGCC-CGCc- -3'
miRNA:   3'- -GGGu-----GCGGGAGCaCUuGCGGaGCGac -5'
21722 5' -58.8 NC_004812.1 + 72533 0.66 0.819826
Target:  5'- gCCgGCGCCCgcggCGaacggGAaccGCGCCUCGggGg -3'
miRNA:   3'- -GGgUGCGGGa---GCa----CU---UGCGGAGCgaC- -5'
21722 5' -58.8 NC_004812.1 + 121792 0.66 0.811408
Target:  5'- gCCGCuuggGCCCUCGcguggcggGGGCgGCCUCGgaGg -3'
miRNA:   3'- gGGUG----CGGGAGCa-------CUUG-CGGAGCgaC- -5'
21722 5' -58.8 NC_004812.1 + 46429 0.66 0.828084
Target:  5'- gUCCAgGCgCUCcccUGGGCGCUggCGCUGg -3'
miRNA:   3'- -GGGUgCGgGAGc--ACUUGCGGa-GCGAC- -5'
21722 5' -58.8 NC_004812.1 + 115323 0.66 0.811408
Target:  5'- -gCAgGUCa-CG-GAGCGCCUCGCUGu -3'
miRNA:   3'- ggGUgCGGgaGCaCUUGCGGAGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 122403 0.66 0.819826
Target:  5'- cCCCugGCuCCUCcucggGUGGACGCg-CGgUGg -3'
miRNA:   3'- -GGGugCG-GGAG-----CACUUGCGgaGCgAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.