miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21722 5' -58.8 NC_004812.1 + 468 0.66 0.819826
Target:  5'- gCCgGCGCgCCUgCGUGcgcacGCGCCU-GCUGc -3'
miRNA:   3'- -GGgUGCG-GGA-GCACu----UGCGGAgCGAC- -5'
21722 5' -58.8 NC_004812.1 + 915 0.77 0.273485
Target:  5'- cCCCACGCCCUCGcGcGCGCCgagcccgccgcgCGCUc -3'
miRNA:   3'- -GGGUGCGGGAGCaCuUGCGGa-----------GCGAc -5'
21722 5' -58.8 NC_004812.1 + 1172 0.67 0.785265
Target:  5'- cCCCGCuCCCUCGU---CGCCgUCGCc- -3'
miRNA:   3'- -GGGUGcGGGAGCAcuuGCGG-AGCGac -5'
21722 5' -58.8 NC_004812.1 + 1474 0.65 0.840943
Target:  5'- gCCgGCGUCCUCGgcgggcggcggcgGAGCGCCggccggccCGCg- -3'
miRNA:   3'- -GGgUGCGGGAGCa------------CUUGCGGa-------GCGac -5'
21722 5' -58.8 NC_004812.1 + 1758 0.68 0.700734
Target:  5'- gCCCGCGCCCccUCGcagccGCGCCcCGCg- -3'
miRNA:   3'- -GGGUGCGGG--AGCacu--UGCGGaGCGac -5'
21722 5' -58.8 NC_004812.1 + 3240 0.67 0.748632
Target:  5'- aCCCgGCGCCCgccagGGGCGCC-CGCg- -3'
miRNA:   3'- -GGG-UGCGGGagca-CUUGCGGaGCGac -5'
21722 5' -58.8 NC_004812.1 + 3379 0.78 0.228032
Target:  5'- cCCCGCGCCCaUCGUGAuagGCGaCUCGCc- -3'
miRNA:   3'- -GGGUGCGGG-AGCACU---UGCgGAGCGac -5'
21722 5' -58.8 NC_004812.1 + 3986 0.67 0.748631
Target:  5'- gCCGCcgaGCCCUCGgccAGCGCCUCcaGCa- -3'
miRNA:   3'- gGGUG---CGGGAGCac-UUGCGGAG--CGac -5'
21722 5' -58.8 NC_004812.1 + 4180 0.66 0.802837
Target:  5'- aCC-CGCCa-CGUGGACGCCgagggCGCc- -3'
miRNA:   3'- gGGuGCGGgaGCACUUGCGGa----GCGac -5'
21722 5' -58.8 NC_004812.1 + 4480 0.66 0.802837
Target:  5'- gCCCACGgCCUCuggaugaccccgGUGGGCGgCaUGCUGu -3'
miRNA:   3'- -GGGUGCgGGAG------------CACUUGCgGaGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 4654 0.68 0.690958
Target:  5'- gCCgGCGgCCUCGU-AGCGCCggCGCg- -3'
miRNA:   3'- -GGgUGCgGGAGCAcUUGCGGa-GCGac -5'
21722 5' -58.8 NC_004812.1 + 5657 0.66 0.818991
Target:  5'- cCCCGCGUCCgccggggggCGUcggaguccugcgcGAACGCCgCGCg- -3'
miRNA:   3'- -GGGUGCGGGa--------GCA-------------CUUGCGGaGCGac -5'
21722 5' -58.8 NC_004812.1 + 5990 0.72 0.504884
Target:  5'- gCCCACGCCC-CG-GAACGCgCgucggCGCg- -3'
miRNA:   3'- -GGGUGCGGGaGCaCUUGCG-Ga----GCGac -5'
21722 5' -58.8 NC_004812.1 + 7643 0.66 0.819826
Target:  5'- gCCGCGCgCCUCGccGACGaCC-CGCUc -3'
miRNA:   3'- gGGUGCG-GGAGCacUUGC-GGaGCGAc -5'
21722 5' -58.8 NC_004812.1 + 8715 0.7 0.611754
Target:  5'- cUCCGCGCCCcccUCGcgagccccGAACGCCUCGaCg- -3'
miRNA:   3'- -GGGUGCGGG---AGCa-------CUUGCGGAGC-Gac -5'
21722 5' -58.8 NC_004812.1 + 9817 0.7 0.591953
Target:  5'- uCCCAgcCGCCCUCGc-GGC-CCUCGUUGg -3'
miRNA:   3'- -GGGU--GCGGGAGCacUUGcGGAGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 10294 0.69 0.681136
Target:  5'- gCCgGCGCCgaCGccUGAGCGCCgucUGCUGc -3'
miRNA:   3'- -GGgUGCGGgaGC--ACUUGCGGa--GCGAC- -5'
21722 5' -58.8 NC_004812.1 + 12208 0.68 0.733516
Target:  5'- gUCGCGCCgCUCGUaccACGCCgccagcagcacgggcUCGCUGa -3'
miRNA:   3'- gGGUGCGG-GAGCAcu-UGCGG---------------AGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 12978 0.66 0.836173
Target:  5'- cUCCGCGCCCg---GGGcCGCgCUCGCg- -3'
miRNA:   3'- -GGGUGCGGGagcaCUU-GCG-GAGCGac -5'
21722 5' -58.8 NC_004812.1 + 13092 0.69 0.641547
Target:  5'- cCCCAUGCgCUCGUacgcccGGGCccGCCUCGCc- -3'
miRNA:   3'- -GGGUGCGgGAGCA------CUUG--CGGAGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.