miRNA display CGI


Results 1 - 20 of 217 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21722 5' -58.8 NC_004812.1 + 154334 0.72 0.504884
Target:  5'- gCCGCGCCgCUCGUGcugcgcgcgGACGCCgaCGCg- -3'
miRNA:   3'- gGGUGCGG-GAGCAC---------UUGCGGa-GCGac -5'
21722 5' -58.8 NC_004812.1 + 153121 0.73 0.406846
Target:  5'- gCCCGCGCCCgCGgcc-CGCCgCGCUGa -3'
miRNA:   3'- -GGGUGCGGGaGCacuuGCGGaGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 101765 0.73 0.415267
Target:  5'- cCCCGgguaguCGCCCUCGUcGAACGUCa-GCUGg -3'
miRNA:   3'- -GGGU------GCGGGAGCA-CUUGCGGagCGAC- -5'
21722 5' -58.8 NC_004812.1 + 113106 0.73 0.441154
Target:  5'- aCCCACGCCCcccUCGcUGAugGCgCUgGCg- -3'
miRNA:   3'- -GGGUGCGGG---AGC-ACUugCG-GAgCGac -5'
21722 5' -58.8 NC_004812.1 + 120661 0.73 0.449985
Target:  5'- gCCCGgGCCCcCGUGAcCGCggCGCUGc -3'
miRNA:   3'- -GGGUgCGGGaGCACUuGCGgaGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 97221 0.72 0.458912
Target:  5'- gCCACGCgCUgCGUGGG-GCCUCGCg- -3'
miRNA:   3'- gGGUGCGgGA-GCACUUgCGGAGCGac -5'
21722 5' -58.8 NC_004812.1 + 25547 0.72 0.467933
Target:  5'- -gCACGCUCUcCGcGGGCGCCUCGCc- -3'
miRNA:   3'- ggGUGCGGGA-GCaCUUGCGGAGCGac -5'
21722 5' -58.8 NC_004812.1 + 62336 0.72 0.477044
Target:  5'- cCCCGCGCgCUCGacgaGGACGCCcCGCc- -3'
miRNA:   3'- -GGGUGCGgGAGCa---CUUGCGGaGCGac -5'
21722 5' -58.8 NC_004812.1 + 131499 0.72 0.504884
Target:  5'- gCCCACGCCC-CG-GAACGCgCgucggCGCg- -3'
miRNA:   3'- -GGGUGCGGGaGCaCUUGCG-Ga----GCGac -5'
21722 5' -58.8 NC_004812.1 + 23669 0.74 0.38224
Target:  5'- gCCUucuuCGCCCUgGUGAugGCCggggucCGCUGc -3'
miRNA:   3'- -GGGu---GCGGGAgCACUugCGGa-----GCGAC- -5'
21722 5' -58.8 NC_004812.1 + 42297 0.74 0.374261
Target:  5'- cCCCGCGUCCguUCcUGGGCGCCgccauggCGCUGa -3'
miRNA:   3'- -GGGUGCGGG--AGcACUUGCGGa------GCGAC- -5'
21722 5' -58.8 NC_004812.1 + 89079 0.75 0.35101
Target:  5'- aCCGCGCCCcguaCGUGGACcacaGCCaaUCGCUGa -3'
miRNA:   3'- gGGUGCGGGa---GCACUUG----CGG--AGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 151983 0.83 0.105999
Target:  5'- gCCCGCGCCCgUGUGGGCGCCcgaGCUGg -3'
miRNA:   3'- -GGGUGCGGGaGCACUUGCGGag-CGAC- -5'
21722 5' -58.8 NC_004812.1 + 94109 0.79 0.197559
Target:  5'- gCCCugGCCCUgGUGcGGgGCCUCGCg- -3'
miRNA:   3'- -GGGugCGGGAgCAC-UUgCGGAGCGac -5'
21722 5' -58.8 NC_004812.1 + 142152 0.79 0.207301
Target:  5'- cCCCGCGCCCUcCGgccacacGGGCGCCaUCGUUGg -3'
miRNA:   3'- -GGGUGCGGGA-GCa------CUUGCGG-AGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 3379 0.78 0.228032
Target:  5'- cCCCGCGCCCaUCGUGAuagGCGaCUCGCc- -3'
miRNA:   3'- -GGGUGCGGG-AGCACU---UGCgGAGCGac -5'
21722 5' -58.8 NC_004812.1 + 65155 0.77 0.262388
Target:  5'- -gCGCGUCCUCGUGGACGCCcaccggCGCa- -3'
miRNA:   3'- ggGUGCGGGAGCACUUGCGGa-----GCGac -5'
21722 5' -58.8 NC_004812.1 + 126423 0.77 0.273485
Target:  5'- cCCCACGCCCUCGcGcGCGCCgagcccgccgcgCGCUc -3'
miRNA:   3'- -GGGUGCGGGAGCaCuUGCGGa-----------GCGAc -5'
21722 5' -58.8 NC_004812.1 + 44616 0.75 0.321635
Target:  5'- gCCCGCGUCCUCGUGGGgauaccgggcCGCC-CGcCUGa -3'
miRNA:   3'- -GGGUGCGGGAGCACUU----------GCGGaGC-GAC- -5'
21722 5' -58.8 NC_004812.1 + 31292 0.75 0.328803
Target:  5'- aCCgGCGCCCUCG-GAacACGCgCUCGCc- -3'
miRNA:   3'- -GGgUGCGGGAGCaCU--UGCG-GAGCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.