miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21722 5' -58.8 NC_004812.1 + 138548 1.09 0.001949
Target:  5'- gCCCACGCCCUCGUGAACGCCUCGCUGc -3'
miRNA:   3'- -GGGUGCGGGAGCACUUGCGGAGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 151983 0.83 0.105999
Target:  5'- gCCCGCGCCCgUGUGGGCGCCcgaGCUGg -3'
miRNA:   3'- -GGGUGCGGGaGCACUUGCGGag-CGAC- -5'
21722 5' -58.8 NC_004812.1 + 26475 0.83 0.105999
Target:  5'- gCCCGCGCCCgUGUGGGCGCCcgaGCUGg -3'
miRNA:   3'- -GGGUGCGGGaGCACUUGCGGag-CGAC- -5'
21722 5' -58.8 NC_004812.1 + 56090 0.81 0.147153
Target:  5'- gCCGCGCCCgaCGUGGGCGCCUacacgcCGCUGc -3'
miRNA:   3'- gGGUGCGGGa-GCACUUGCGGA------GCGAC- -5'
21722 5' -58.8 NC_004812.1 + 94109 0.79 0.197559
Target:  5'- gCCCugGCCCUgGUGcGGgGCCUCGCg- -3'
miRNA:   3'- -GGGugCGGGAgCAC-UUgCGGAGCGac -5'
21722 5' -58.8 NC_004812.1 + 142152 0.79 0.207301
Target:  5'- cCCCGCGCCCUcCGgccacacGGGCGCCaUCGUUGg -3'
miRNA:   3'- -GGGUGCGGGA-GCa------CUUGCGG-AGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 34280 0.78 0.228032
Target:  5'- cCCCGCGCCCaUCGUGAuagGCGaCUCGCc- -3'
miRNA:   3'- -GGGUGCGGG-AGCACU---UGCgGAGCGac -5'
21722 5' -58.8 NC_004812.1 + 3379 0.78 0.228032
Target:  5'- cCCCGCGCCCaUCGUGAuagGCGaCUCGCc- -3'
miRNA:   3'- -GGGUGCGGG-AGCACU---UGCgGAGCGac -5'
21722 5' -58.8 NC_004812.1 + 85763 0.77 0.244709
Target:  5'- cCCCGCGUcuCCUCGUGGGCGucgucCCUCGCg- -3'
miRNA:   3'- -GGGUGCG--GGAGCACUUGC-----GGAGCGac -5'
21722 5' -58.8 NC_004812.1 + 65155 0.77 0.262388
Target:  5'- -gCGCGUCCUCGUGGACGCCcaccggCGCa- -3'
miRNA:   3'- ggGUGCGGGAGCACUUGCGGa-----GCGac -5'
21722 5' -58.8 NC_004812.1 + 915 0.77 0.273485
Target:  5'- cCCCACGCCCUCGcGcGCGCCgagcccgccgcgCGCUc -3'
miRNA:   3'- -GGGUGCGGGAGCaCuUGCGGa-----------GCGAc -5'
21722 5' -58.8 NC_004812.1 + 126423 0.77 0.273485
Target:  5'- cCCCACGCCCUCGcGcGCGCCgagcccgccgcgCGCUc -3'
miRNA:   3'- -GGGUGCGGGAGCaCuUGCGGa-----------GCGAc -5'
21722 5' -58.8 NC_004812.1 + 85388 0.76 0.300835
Target:  5'- gCCGCGCCCUCGcGGcCGCC-CGCUc -3'
miRNA:   3'- gGGUGCGGGAGCaCUuGCGGaGCGAc -5'
21722 5' -58.8 NC_004812.1 + 119400 0.76 0.314584
Target:  5'- gCCGCGUCgUCGUGGACGgCCccgCGCUGc -3'
miRNA:   3'- gGGUGCGGgAGCACUUGC-GGa--GCGAC- -5'
21722 5' -58.8 NC_004812.1 + 56168 0.75 0.320924
Target:  5'- aCCACGCCCUCGcaguucUGGGCggacgugcgggcgGCCUCGCg- -3'
miRNA:   3'- gGGUGCGGGAGC------ACUUG-------------CGGAGCGac -5'
21722 5' -58.8 NC_004812.1 + 44616 0.75 0.321635
Target:  5'- gCCCGCGUCCUCGUGGGgauaccgggcCGCC-CGcCUGa -3'
miRNA:   3'- -GGGUGCGGGAGCACUU----------GCGGaGC-GAC- -5'
21722 5' -58.8 NC_004812.1 + 31292 0.75 0.328803
Target:  5'- aCCgGCGCCCUCG-GAacACGCgCUCGCc- -3'
miRNA:   3'- -GGgUGCGGGAGCaCU--UGCG-GAGCGac -5'
21722 5' -58.8 NC_004812.1 + 89079 0.75 0.35101
Target:  5'- aCCGCGCCCcguaCGUGGACcacaGCCaaUCGCUGa -3'
miRNA:   3'- gGGUGCGGGa---GCACUUG----CGG--AGCGAC- -5'
21722 5' -58.8 NC_004812.1 + 42297 0.74 0.374261
Target:  5'- cCCCGCGUCCguUCcUGGGCGCCgccauggCGCUGa -3'
miRNA:   3'- -GGGUGCGGG--AGcACUUGCGGa------GCGAC- -5'
21722 5' -58.8 NC_004812.1 + 23669 0.74 0.38224
Target:  5'- gCCUucuuCGCCCUgGUGAugGCCggggucCGCUGc -3'
miRNA:   3'- -GGGu---GCGGGAgCACUugCGGa-----GCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.