miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21723 3' -61.7 NC_004812.1 + 156373 0.66 0.675676
Target:  5'- -cGCGCgGgaGCcuUGggCCCCGCGGGAg -3'
miRNA:   3'- ccUGCGgCgaCGc-ACa-GGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 156059 0.68 0.539886
Target:  5'- cGGGCGUCGCgcgGCGcGUCgCCGCcuuccggcucccGGGGc -3'
miRNA:   3'- -CCUGCGGCGa--CGCaCAGgGGCG------------UCCU- -5'
21723 3' -61.7 NC_004812.1 + 155575 0.72 0.329387
Target:  5'- gGGGCGCgCGCggGCGgccggGcCCUCGCGGGGg -3'
miRNA:   3'- -CCUGCG-GCGa-CGCa----CaGGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 155375 0.67 0.636689
Target:  5'- cGGCGCCGCccggGCGgggaggaGcCCCCGCGGc- -3'
miRNA:   3'- cCUGCGGCGa---CGCa------CaGGGGCGUCcu -5'
21723 3' -61.7 NC_004812.1 + 154987 0.67 0.597646
Target:  5'- gGGAC-CCGC-GCGcacgGUCCCucgCGCGGGGc -3'
miRNA:   3'- -CCUGcGGCGaCGCa---CAGGG---GCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 154455 0.68 0.539886
Target:  5'- aGGugGCCGCcgccGCGag-CCCCGCccgcGGGGc -3'
miRNA:   3'- -CCugCGGCGa---CGCacaGGGGCG----UCCU- -5'
21723 3' -61.7 NC_004812.1 + 154381 0.66 0.665959
Target:  5'- -cGCGCCGC-GCGUGcgCUgggCCGCGGGc -3'
miRNA:   3'- ccUGCGGCGaCGCACa-GG---GGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 154209 0.68 0.587928
Target:  5'- uGGccGCGCCGCUGCGgcccGUCUaccuggCGCuGGAc -3'
miRNA:   3'- -CC--UGCGGCGACGCa---CAGGg-----GCGuCCU- -5'
21723 3' -61.7 NC_004812.1 + 153412 0.66 0.695004
Target:  5'- cGGGC-CCGCUGCGccgcgCCgCCGCcuGGAu -3'
miRNA:   3'- -CCUGcGGCGACGCaca--GG-GGCGu-CCU- -5'
21723 3' -61.7 NC_004812.1 + 152406 0.76 0.204447
Target:  5'- cGACGCCGCcGCG-GUCCCCGCcguucccgccGGGu -3'
miRNA:   3'- cCUGCGGCGaCGCaCAGGGGCG----------UCCu -5'
21723 3' -61.7 NC_004812.1 + 151261 0.66 0.703642
Target:  5'- cGACGCCGCcGCGc--CCCCGCcgaccccGGGc -3'
miRNA:   3'- cCUGCGGCGaCGCacaGGGGCG-------UCCu -5'
21723 3' -61.7 NC_004812.1 + 151119 0.72 0.358765
Target:  5'- cGGcCGCCGCcGCcgccGUGUCCCCGCGc-- -3'
miRNA:   3'- -CCuGCGGCGaCG----CACAGGGGCGUccu -5'
21723 3' -61.7 NC_004812.1 + 150921 0.69 0.484132
Target:  5'- cGGAgacCGCCGC-GCGgcGUUCgCGCAGGAc -3'
miRNA:   3'- -CCU---GCGGCGaCGCa-CAGGgGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 150848 0.73 0.322325
Target:  5'- -cGCGCUGCUGaCGcUGUCCCUGUGGGc -3'
miRNA:   3'- ccUGCGGCGAC-GC-ACAGGGGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 149570 0.78 0.13888
Target:  5'- gGGACGCCGCcccuCGcGUCCCCGgGGGAa -3'
miRNA:   3'- -CCUGCGGCGac--GCaCAGGGGCgUCCU- -5'
21723 3' -61.7 NC_004812.1 + 149140 0.73 0.288721
Target:  5'- cGGcCGCCGggGCGcgcgGUCCCCGC-GGAg -3'
miRNA:   3'- -CCuGCGGCgaCGCa---CAGGGGCGuCCU- -5'
21723 3' -61.7 NC_004812.1 + 148221 0.67 0.607388
Target:  5'- gGGGgGCCGCuUGgGUGg-CCgGCGGGGg -3'
miRNA:   3'- -CCUgCGGCG-ACgCACagGGgCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 147068 0.67 0.636689
Target:  5'- cGGugGCCGaaGCGggGcCUCCGCAGc- -3'
miRNA:   3'- -CCugCGGCgaCGCa-CaGGGGCGUCcu -5'
21723 3' -61.7 NC_004812.1 + 146855 0.68 0.568584
Target:  5'- cGGcGCGCCGCgggccuggugGCG-GUCCCCuccCGGGGa -3'
miRNA:   3'- -CC-UGCGGCGa---------CGCaCAGGGGc--GUCCU- -5'
21723 3' -61.7 NC_004812.1 + 145787 0.78 0.142339
Target:  5'- cGugGCCGaagacCUGCGUGUCCUCGCGGaGAc -3'
miRNA:   3'- cCugCGGC-----GACGCACAGGGGCGUC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.