miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21723 3' -61.7 NC_004812.1 + 847 0.8 0.116751
Target:  5'- aGGGCcCCGC-GCGUGUCCCCGCGGc- -3'
miRNA:   3'- -CCUGcGGCGaCGCACAGGGGCGUCcu -5'
21723 3' -61.7 NC_004812.1 + 38552 0.7 0.431287
Target:  5'- gGGGCGCgaaGCUGCG-Gg-CCCGCGGGc -3'
miRNA:   3'- -CCUGCGg--CGACGCaCagGGGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 124935 0.7 0.448535
Target:  5'- aGGACGa-GCUGCGcccccagcggcUGUCCCCGgcccucCAGGAc -3'
miRNA:   3'- -CCUGCggCGACGC-----------ACAGGGGC------GUCCU- -5'
21723 3' -61.7 NC_004812.1 + 13446 0.66 0.705556
Target:  5'- gGGACGCCGUggucucgggggugggGgGUGgCgUCGCGGGGa -3'
miRNA:   3'- -CCUGCGGCGa--------------CgCACaGgGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 60117 0.75 0.2194
Target:  5'- aGGGucCGCCGCUgGCGgcggcGUCCuCCGCGGGGg -3'
miRNA:   3'- -CCU--GCGGCGA-CGCa----CAGG-GGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 23632 0.73 0.288721
Target:  5'- cGGcCGCCGggGCGcgcgGUCCCCGC-GGAg -3'
miRNA:   3'- -CCuGCGGCgaCGCa---CAGGGGCGuCCU- -5'
21723 3' -61.7 NC_004812.1 + 3817 0.73 0.315377
Target:  5'- cGGCGCCGCcgGCGacgcggagGUCCCCGCgcAGGc -3'
miRNA:   3'- cCUGCGGCGa-CGCa-------CAGGGGCG--UCCu -5'
21723 3' -61.7 NC_004812.1 + 118935 0.73 0.322325
Target:  5'- gGGACGCggCGCUGC-UGcCCCCGCuGGu -3'
miRNA:   3'- -CCUGCG--GCGACGcACaGGGGCGuCCu -5'
21723 3' -61.7 NC_004812.1 + 30066 0.72 0.329387
Target:  5'- gGGGCGCgCGCggGCGgccggGcCCUCGCGGGGg -3'
miRNA:   3'- -CCUGCG-GCGa-CGCa----CaGGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 2479 0.71 0.40616
Target:  5'- gGGGCGCCgGCgGCGgcggCCUCGCGGGc -3'
miRNA:   3'- -CCUGCGG-CGaCGCaca-GGGGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 25611 0.72 0.358765
Target:  5'- cGGcCGCCGCcGCcgccGUGUCCCCGCGc-- -3'
miRNA:   3'- -CCuGCGGCGaCG----CACAGGGGCGUccu -5'
21723 3' -61.7 NC_004812.1 + 126271 0.73 0.322325
Target:  5'- cGACGCCGCUgGCGUucGagCUCGCGGGGc -3'
miRNA:   3'- cCUGCGGCGA-CGCA--CagGGGCGUCCU- -5'
21723 3' -61.7 NC_004812.1 + 24061 0.78 0.13888
Target:  5'- gGGACGCCGCcccuCGcGUCCCCGgGGGAa -3'
miRNA:   3'- -CCUGCGGCGac--GCaCAGGGGCgUCCU- -5'
21723 3' -61.7 NC_004812.1 + 124348 0.71 0.381973
Target:  5'- gGGACGCCGCggaccgggagGaCGUGUCCaucaCGCgcgAGGAc -3'
miRNA:   3'- -CCUGCGGCGa---------C-GCACAGGg---GCG---UCCU- -5'
21723 3' -61.7 NC_004812.1 + 13572 0.76 0.194976
Target:  5'- gGGGCGCCGgaGCGaguuUCCCCGgGGGGa -3'
miRNA:   3'- -CCUGCGGCgaCGCac--AGGGGCgUCCU- -5'
21723 3' -61.7 NC_004812.1 + 150848 0.73 0.322325
Target:  5'- -cGCGCUGCUGaCGcUGUCCCUGUGGGc -3'
miRNA:   3'- ccUGCGGCGAC-GC-ACAGGGGCGUCCu -5'
21723 3' -61.7 NC_004812.1 + 86393 0.71 0.389928
Target:  5'- gGGugGCgGCUGCGgGUCCcgaCCGCgccuAGGGg -3'
miRNA:   3'- -CCugCGgCGACGCaCAGG---GGCG----UCCU- -5'
21723 3' -61.7 NC_004812.1 + 34334 0.7 0.439863
Target:  5'- cGGCGCCGCcGCGccccccgugGUCCCCGUGGc- -3'
miRNA:   3'- cCUGCGGCGaCGCa--------CAGGGGCGUCcu -5'
21723 3' -61.7 NC_004812.1 + 26898 0.76 0.204447
Target:  5'- cGACGCCGCcGCG-GUCCCCGCcguucccgccGGGu -3'
miRNA:   3'- cCUGCGGCGaCGCaCAGGGGCG----------UCCu -5'
21723 3' -61.7 NC_004812.1 + 73815 0.73 0.315377
Target:  5'- cGGACGCCGCcGUGUucGaCCCCG-AGGAg -3'
miRNA:   3'- -CCUGCGGCGaCGCA--CaGGGGCgUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.